Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70820 343 / 1e-114 phosphoglucomutase, putative / glucose phosphomutase, putative (.1) AT5G17530 138 / 6e-37 phosphoglucosamine mutase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015835 [exp] 468 / 1e-163 AT1G70820 901 / 0.0 phosphoglucomutase, putative / glucose phosphomutase, putative (.1) Lus10023518 [exp] 133 / 6e-35 AT5G17530 896 / 0.0 phosphoglucosamine mutase family protein (.1.2.3) Lus10040402 [exp] 120 / 2e-30 AT5G17530 778 / 0.0 phosphoglucosamine mutase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G131400 [exp] 346 / 5e-116 AT1G70820 964 / 0.0 phosphoglucomutase, putative / glucose phosphomutase, putative (.1) Potri.008G039200 [exp] 143 / 9e-39 AT5G17530 872 / 0.0 phosphoglucosamine mutase family protein (.1.2.3) Potri.010G223000 [exp] 142 / 2e-38 AT5G17530 865 / 0.0 phosphoglucosamine mutase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02878 [flax] [poplar] PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
Representative CDS sequence Show only first row Show all	>Lus10020414 pacid=23139608 polypeptide=Lus10020414 locus=Lus10020414.g ID=Lus10020414.BGIv1.0 annot-version=v1.0 ATGATTGCATCGTCGTCGTCCACAGCTACTTCAATCTCCCTACAACACAACATCAATAACAAAACAACTTCCCACCCTTCCAATCTGTCCAACCTCAAGC CAACAATATCATCGTCATCATCACGTGCTAGATCATTGCGTCATTTCTCCTGCCCTAATGCCGGCGGTGGGAATAAGCAGCAGGTTGTTTTCATGGAGGA TCAGGGGGAAGAAGAGATGGACAAGATTCGACGGCTGCAGAACGGTTCGGACGTCAGAGGGGTGGCGTTGGACGGGGAGAAGGGCCGGACAGTGGACTTA ACTCCTGCCGCCGTGGAGGCCATCTCAGAGAGCTTCGGGGAGTGGGTTATTAGTCAAGAGGTTGGATCCGGTCCGGTTAAGGTGTCGTTGGGTCGGGACC CGAGGGTGACGGGCGGGTCGTTGAGTGTCGCAGTGTTTTCGGGTCTGGCTCGGGCAGGGTGCTTGGTCTATGACATGGGTCTAGCCACCACTCCGGCATG CTTCATGAGTACCCTGCTGCCTCCTTTCGCCTTTCATGCCTCCATCATGATGACGGCGTCACACTTACCATACACTCGGAATGGGCTGAAGTTCTTCACA AGGAGAGGAGGGCTAACGTCGGCGGAGGTGGAGGAGGTATGCGACAAGGCGGCGAGGAAGTACGCCAACAGGGTGGCTAAAGTGTCGACGTTGATGAATG ATCCGCCGAGGAGGGTGGATTTCATGAGCATTTACGCGCGTCATCTCCGGGAGATCATCAAGGAGCGTGTCAACCACCCTCTCCATTACGACACACCTCT TCAGGGCTTCCAGGTAATTTTACAGAGGTTGCCTATTTTCTGGCCAGTCACTTGA
AA sequence Show only first row Show all	>Lus10020414 pacid=23139608 polypeptide=Lus10020414 locus=Lus10020414.g ID=Lus10020414.BGIv1.0 annot-version=v1.0 MIASSSSTATSISLQHNINNKTTSHPSNLSNLKPTISSSSSRARSLRHFSCPNAGGGNKQQVVFMEDQGEEEMDKIRRLQNGSDVRGVALDGEKGRTVDL TPAAVEAISESFGEWVISQEVGSGPVKVSLGRDPRVTGGSLSVAVFSGLARAGCLVYDMGLATTPACFMSTLLPPFAFHASIMMTASHLPYTRNGLKFFT RRGGLTSAEVEEVCDKAARKYANRVAKVSTLMNDPPRRVDFMSIYARHLREIIKERVNHPLHYDTPLQGFQVILQRLPIFWPVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70820			phosphoglucomutase, putative /...		Lus10020414 [exp]	0	1
AT1G70820			phosphoglucomutase, putative /...		Lus10015835 [exp]	2.0	0.9103
AT3G26510			Octicosapeptide/Phox/Bem1p fam...		Lus10036862 [exp]	3.5	0.8826
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Lus10010605 [exp]	4.6	0.8306
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10023230 [exp]	11.2	0.7924
AT4G01580	B3		AP2/B3-like transcriptional fa...		Lus10003313 [exp]	11.3	0.7742
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10039334 [exp]	12.7	0.8188
AT1G19670		CORI1, ATHCOR1,...	CORONATINE-INDUCED PROTEIN 1, ...		Lus10004076 [exp]	13.6	0.8154
AT4G35910			Adenine nucleotide alpha hydro...		Lus10042060 [exp]	18.5	0.8001
AT1G70820			phosphoglucomutase, putative /...		Lus10009327 [exp]	18.9	0.8177
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10040175 [exp]	19.4	0.8213

Compare expression of checked genes

Lus10020414 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.