Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15820 384 / 2e-131 CP24, LHCB6 light harvesting complex photosystem II subunit 6 (.1) AT4G33580 291 / 1e-94 ATBCA5 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) AT1G58180 222 / 8e-69 ATBCA6 A. THALIANA BETA CARBONIC ANHYDRASE 6, beta carbonic anhydrase 6 (.1.2.3.4) AT1G70410 209 / 8e-64 ATBCA4 beta carbonic anhydrase 4 (.1.2.3) AT1G23730 195 / 2e-58 ATBCA3 BETA CARBONIC ANHYDRASE 3, beta carbonic anhydrase 3 (.1) AT5G14740 191 / 8e-57 BETACA2, CA18, CA2 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) AT3G01500 187 / 6e-55 SABP3, ATBCA1, CA1, ATSABP3 ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, BETA CARBONIC ANHYDRASE 1, carbonic anhydrase 1 (.1.2.3) AT1G45474 128 / 1e-33 LHCA5 photosystem I light harvesting complex gene 5 (.1.2) AT1G19150 125 / 2e-32 LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA6, LHCA2*1, LHCA2*1, LHCA2*1, LH photosystem I light harvesting complex gene 6 (.1) AT3G61470 119 / 3e-30 LHCA2 photosystem I light harvesting complex gene 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015833 [exp] 575 / 0 AT4G33580 306 / 2e-103 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Lus10015834 [exp] 442 / 2e-154 AT1G15820 393 / 7e-140 light harvesting complex photosystem II subunit 6 (.1) Lus10015831 [exp] 441 / 3e-154 AT1G15820 384 / 2e-136 light harvesting complex photosystem II subunit 6 (.1) Lus10020418 [exp] 288 / 2e-95 AT1G15820 247 / 1e-83 light harvesting complex photosystem II subunit 6 (.1) Lus10009274 [exp] 253 / 5e-80 AT4G33580 281 / 2e-94 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Lus10016443 [exp] 201 / 2e-59 AT5G14740 298 / 4e-101 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Lus10022235 [exp] 200 / 5e-59 AT3G01500 460 / 3e-163 ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, BETA CARBONIC ANHYDRASE 1, carbonic anhydrase 1 (.1.2.3) Lus10015892 [exp] 190 / 2e-56 AT4G33580 205 / 3e-65 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Lus10030614 [exp] 185 / 4e-54 AT1G70410 351 / 6e-123 beta carbonic anhydrase 4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G210000 [exp] 407 / 9e-141 AT1G15820 424 / 7e-152 light harvesting complex photosystem II subunit 6 (.1) Potri.003G020400 [exp] 404 / 1e-139 AT1G15820 421 / 9e-151 light harvesting complex photosystem II subunit 6 (.1) Potri.017G044700 [exp] 344 / 5e-115 AT4G33580 339 / 8e-117 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Potri.007G114600 [exp] 342 / 2e-114 AT4G33580 335 / 4e-115 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Potri.005G156600 [exp] 277 / 5e-89 AT4G33580 303 / 1e-102 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Potri.010G041100 [exp] 197 / 6e-59 AT5G14740 392 / 4e-138 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Potri.008G189800 [exp] 192 / 2e-57 AT5G14740 375 / 5e-133 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Potri.001G348900 [exp] 193 / 2e-56 AT3G01500 429 / 2e-151 ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, BETA CARBONIC ANHYDRASE 1, carbonic anhydrase 1 (.1.2.3) Potri.015G075902 [exp] 174 / 2e-50 AT5G14740 304 / 1e-104 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Potri.015G076000 [exp] 172 / 1e-49 AT5G14740 303 / 4e-104 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00484 [flax] [poplar] Pro_CA Carbonic anhydrase PF00504 [flax] [poplar] Chloroa_b-bind Chlorophyll A-B binding protein
Representative CDS sequence Show only first row Show all	>Lus10020415 pacid=23139534 polypeptide=Lus10020415 locus=Lus10020415.g ID=Lus10020415.BGIv1.0 annot-version=v1.0 ATGGCATTTCTTTCACCGGCGTCCTCTGTCTCCAATAACCCTTCTTCTTCATCTCTCATTCCATCTTCCAGTTCATCATCCTCCTCCTCCGCTCCTCCCT CAGCCTCATTTTTAAGATCCCAATCTATTTCTGGTTCAGGATCATTCCCTGCTTCCAAGGGCATGTCAGCGTGCAAGTTGAAGGTGTCCAGCAATCCAAC AGCGATAACTAAGGAACGGGAAAACGATGATGCAGCTACTGTTAGTGCTGGGAATTTGTTTGATGATATGAAGGCCAGGTTCTTGAGTTTCAAGAAGCAA AAATACTTGGAGAACAAAGAACATTATGACAGTCTTGCCAAGAGTCAAGCACCAAAGGTAAGCACGATTTTTCAGCTTCTAGATCAACTCGAAGTTCAGC CTTACAAAATCCGAGACCTAAAATCAGGAACTTTGGTCCACAAATTTTGGAAAATGCAGTTTATGGTGATTGCCTGTGGGGACTCCAGGGTTTGTCCCTC TAACATTCTGGGATTCCAGCCAGGGGAAGCATTTGTAGTCCGGAACGTGGCCAATCTCGTACCCACTTTCGAGAGTGGTCCATCTGAGACAAAGGCAGCG CTGGAATTTGCTGTAAATGCTCTCAAGGTTCAGAACATTTTCGTCGTTGGCCACAGCCGATGTGGAGGAATTCGTGCTCTAATGAGTATGCATGATGATG TAGAAACAAGTAGCTTTATCGGTAGCTGGGTTTCTGTTGGGATGAATGCACGGATTAAAACAAAGGCTGCTGCTTCGAACCTCAGCTTCGATAACCAGTG TACACACTGTGAAAAGGAATCGGTGAACTGTACATTGAAAAACCTGCTGACATATCCATGGATAGAAGAAAAAGTGAGGAGTGAAGAACTGTCCATCCAT GGTGGCTACTACGATTTTGTAAACTGTACTTTTGAGAGATGGACACTGGATTACAAACAAGACGTGGAAGCAAGAGCAGTCAATCATCACTTTTGGCTGC GCCGGCCGCTTCTAGACCGGCCGCCATTGGCGCCCGCCATTGGTGGTGGTAGAAGGAAATTGGTGATAGTAGCTGCTAAGAAATCATGGATCCCTGCTGT TAAAGGCGGCGGCAACCTCGTCGATCCCGAATGGCTCGATGGCTCGCTACCCGGTGACTTCGGGTTCGACCCGCTGGGTTTGGGGAAGGACCCGGCGTTC CTAAAATGGTACAGAGAAGCGGAGCTCACGCACGGGCGGGGGGCGATGGCGGCGGTGCTGGGAATCTTCGTAGGGCAGGCATGGAGCGGAATCCCGTGGT TCGAGGCAGGAGCAGACCCGGGTGCTATTGCTCCGTTCTCGTTCGGGTCACTGCTGGGTACCCAACTCATACTCATGGGTTGGGTTGAGAGCAAGAGATG GGTTGATTTCTTCAACCCGGACTCGCAGTCGGTGGAATGGGCGACACCTTGGTCAAGGACTTCCGAGAATTTTGCGAACGCCACAGGGGAACAGGGTTAC CCGGGTGGGAAGTTCTTCGACCCGCTTGGGTTCGCCGGAACATTGAAGGATGGAGAGTACATTGCCGACGGAGAGAAGCTTGAGAGATTGAAGTTGGCTG AGATCAAACACGCTAGGCTCGCCATGTTGGCGATGCTCATCTTTTACTTCGAAGCTGGACAGGGCAAAACCCCTCTCGGCGCTCTCGGCCTTTAG
AA sequence Show only first row Show all	>Lus10020415 pacid=23139534 polypeptide=Lus10020415 locus=Lus10020415.g ID=Lus10020415.BGIv1.0 annot-version=v1.0 MAFLSPASSVSNNPSSSSLIPSSSSSSSSSAPPSASFLRSQSISGSGSFPASKGMSACKLKVSSNPTAITKERENDDAATVSAGNLFDDMKARFLSFKKQ KYLENKEHYDSLAKSQAPKVSTIFQLLDQLEVQPYKIRDLKSGTLVHKFWKMQFMVIACGDSRVCPSNILGFQPGEAFVVRNVANLVPTFESGPSETKAA LEFAVNALKVQNIFVVGHSRCGGIRALMSMHDDVETSSFIGSWVSVGMNARIKTKAAASNLSFDNQCTHCEKESVNCTLKNLLTYPWIEEKVRSEELSIH GGYYDFVNCTFERWTLDYKQDVEARAVNHHFWLRRPLLDRPPLAPAIGGGRRKLVIVAAKKSWIPAVKGGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAF LKWYREAELTHGRGAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPDSQSVEWATPWSRTSENFANATGEQGY PGGKFFDPLGFAGTLKDGEYIADGEKLERLKLAEIKHARLAMLAMLIFYFEAGQGKTPLGALGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10020415 [exp]	0	1
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10020418 [exp]	1.4	0.9607
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10015834 [exp]	2.0	0.9359
AT2G34620			Mitochondrial transcription te...		Lus10032120 [exp]	3.9	0.9253
AT4G28660		PSB28	photosystem II reaction center...		Lus10022867 [exp]	3.9	0.9322
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Lus10021839 [exp]	4.2	0.9013
AT4G14890		FdC2	ferredoxin C 2, 2Fe-2S ferredo...		Lus10010557 [exp]	11.0	0.9064
AT4G37200		HCF164	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10016780 [exp]	11.0	0.8909
AT1G55670		PSAG	photosystem I subunit G (.1)		Lus10028806 [exp]	11.1	0.9279
AT3G61870			unknown protein		Lus10012617 [exp]	13.6	0.9180
AT1G76100		PETE1	plastocyanin 1 (.1)		Lus10005628 [exp]	13.7	0.9169

Compare expression of checked genes

Lus10020415 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.