Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10160 302 / 7e-105 Thioesterase superfamily protein (.1) AT2G22230 296 / 2e-102 Thioesterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015830 [exp] 385 / 2e-137 AT5G10160 309 / 9e-108 Thioesterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G020300 [exp] 322 / 3e-112 AT5G10160 310 / 6e-108 Thioesterase superfamily protein (.1) Potri.001G209900 [exp] 150 / 1e-46 AT5G10160 157 / 2e-50 Thioesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [flax] [poplar] HotDog PF07977 [flax] [poplar] FabA FabA-like domain
Representative CDS sequence Show only first row Show all	>Lus10020419 pacid=23139519 polypeptide=Lus10020419 locus=Lus10020419.g ID=Lus10020419.BGIv1.0 annot-version=v1.0 ATGGCTGCATCAGCGGCTCTCGCCAATTCCCTTCTACTTCCCTCTCGTTCTACAGCTTCCGCACCCTCTTCCTTTTCATCCACCAACTCCAATGCGCTCG TTCCGTCGAGATTCTCGCTCTCAAGCTCTAGATCCCTATTGTTGACTACCCAGTTGAAGATGTCGAGAAATTCGAGATCTTTCGTAGCCAACTCTTCTCT TGAAGACGCCTCCGCTGCTGCTGTTGACGAACCTAAAAAGGACGAGACCCCCATCGAGCTGAGGTATCCGGCTTATCCTACTGTCATGGACATTAACCAG ATTCGCGAGATATTGCCACATCGGTTCCCATTTCTGCTGGTGGATAGAGTGATTGAGTACAATCCTGGTGTTTCGGCTGTTGCAATAAAAAATGTTACGA TAAATGACAATTTCTTCCCTGGCCATTTTCCTGAGAGGCCAATTATGCCGGGTGTTCTAATGATTGAGGCAATGGCACAAGTGGGTGGGTTGGTAATGCT GCAACCAGAAATTGGAGGATCAAAGGACTCGTTTTTCTTCGCTGGAATCGACAAGGTCAGGTTCCGGAAACCAGTGATAGCTGGAGACACCTTGGTGATG AGAATGACACTTGTGAAGCTTCAGAAACGTTTCGGAATTGCAAAGATGGAAGGCAAAGCTTATGTCGGAATCGACGTGGTCTGCGAAGGGGAGTTCCTCA TGGCCATGGGTTAA
AA sequence Show only first row Show all	>Lus10020419 pacid=23139519 polypeptide=Lus10020419 locus=Lus10020419.g ID=Lus10020419.BGIv1.0 annot-version=v1.0 MAASAALANSLLLPSRSTASAPSSFSSTNSNALVPSRFSLSSSRSLLLTTQLKMSRNSRSFVANSSLEDASAAAVDEPKKDETPIELRYPAYPTVMDINQ IREILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMIEAMAQVGGLVMLQPEIGGSKDSFFFAGIDKVRFRKPVIAGDTLVM RMTLVKLQKRFGIAKMEGKAYVGIDVVCEGEFLMAMG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10160			Thioesterase superfamily prote...		Lus10020419 [exp]	0	1
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Lus10005430 [exp]	3.5	0.8754
AT5G45750		AtRABA1c	RAB GTPase homolog A1C (.1)		Lus10029253 [exp]	3.5	0.8709
AT5G16390		CAC1-A, BCCP-1,...	BIOTIN CARBOXYL-CARRIER PROTEI...		Lus10020619 [exp]	3.7	0.8820
AT1G12460			Leucine-rich repeat protein ki...		Lus10007020 [exp]	5.2	0.8298
AT5G45750		AtRABA1c	RAB GTPase homolog A1C (.1)		Lus10007306 [exp]	8.4	0.8250
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10034458 [exp]	10.2	0.8417
AT4G33670			NAD(P)-linked oxidoreductase s...		Lus10020504 [exp]	10.4	0.8397
AT1G32860			Glycosyl hydrolase superfamily...		Lus10033244 [exp]	13.0	0.8323
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10031337 [exp]	16.4	0.8473
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Lus10031409 [exp]	17.1	0.8063

Compare expression of checked genes

Lus10020419 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.