Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64090 414 / 7e-139 unknown protein AT5G21050 216 / 5e-64 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015829 [exp] 319 / 1e-105 AT5G64090 146 / 6e-42 unknown protein Lus10001150 [exp] 163 / 7e-45 AT5G21050 348 / 2e-119 unknown protein Lus10019547 [exp] 60 / 8e-11 AT5G21050 100 / 1e-26 unknown protein Lus10027663 [exp] 41 / 0.0005 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G209800 [exp] 438 / 7e-149 AT5G64090 333 / 4e-111 unknown protein Potri.003G020500 [exp] 409 / 1e-137 AT5G64090 350 / 1e-117 unknown protein Potri.009G158000 [exp] 232 / 9e-70 AT5G21050 380 / 2e-131 unknown protein Potri.004G195900 [exp] 201 / 2e-58 AT5G21050 326 / 1e-110 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09790 [flax] [poplar] Hyccin Hyccin
Representative CDS sequence Show only first row Show all	>Lus10020420 pacid=23139557 polypeptide=Lus10020420 locus=Lus10020420.g ID=Lus10020420.BGIv1.0 annot-version=v1.0 ATGGTTGAAATGAAAGGGTTGAGTTCTCCATCGTTTGAGTCAATCAGCAACAACCGAAAGCAGTGTCGGCACAATAAAGCTACAATTGTCAAGGTTTCCA AAACCAGGAACAACCCTGGAAGGATATTCTATCGATGTTTATGGTGGACGGTGAGGACCTGCCATACCGTCGGCGGTAATTTTGGGAAGCAAAGTTCTGT CGAATCCTGGCAATACAGTGACCGATGCGCTATCGCTGTACACAAAGCAGAGAGACGGAAACCTAAAGTATTCACTCTGAAGGCTGAGCTAGATGTAATA ACTGAATGTCGGAACAAGCTAAGTGCTGAGTTGAGAGATTTAGAGGTTGCAAAGCACATCCCCCAGCCAAAGGAAAGTACAGTCTTCCTTTTCTCGCCGC TTTCGTCGCTTTCTTCCGCCACCGTAACGCCAAGCGCCTACCACCCATTCCCAACCGACCACCGATTCTCTCTCCACCGCCATTCTTGCTGTCCAAACGC AGTCTCCTCCCTAGTCAAACAACTGAAATCCACCCCTATGGACTTCAGCAATCACAACAAGATCAGTTACTCCCCAACCTCTTCCTCCTCCTCTATCTCC TCCACGCCCCAGCCGACCACCACCACCACCTCCTCCTCCGCCACCGCTGCCAACACCAACTCCACCGCTGCTACCTCCAACGATCCGATGCACTCTTGGT GGGAATCTATCTCCAGAGCGCGTACCCGCATTCTCGTCCTCAACTCCATCCTCCCTCCCGATCCTTCCTCTTCCTTCTCCCTTTCTTCTCTCGCCGACTC CGACAGGCCGGCGCTCTCCTTCCTAGCTTCTCCCGACGCTTATTCTCTCTTCTCCTCTGCGCTATTGGTTCCTTCTTCCGGTTCCGGCTCCGATCCTCTT TGCCAGTGGCTGTACGAAACTTACCTTTCCGCTGATCCTCACCTCCGTCTCATCGTTCTCTCCTTCGTTCCTCTGCTCACCGGCATTTACCTCTCCCGGA TCCACTCATCCGAATCGACTTCCTCTCCTTCCCTCGCTGGGTTCGAGGCTGTCCTCCTTGCGATATACTCTACGGAGGTGAAATCTAGGGCCGGGAAACC TGTTCTAGCTCAGATTCCAGATCTCTCGCAGCCGTCTCTGTATCACAGCCCCCGCAACAGGCAACAACGACCGACTAAGTCGAGGCCCTCCGTTGGAGTT TTGAGTGCTCCACTGGAGCCGCAGCTTGCTGTCAAGTCAACTAAGCGACCGATCATCGTCGGGGTGGCACTTGATAGCTATTTCAAGCAGATCTCTCAGA TGCCGAGCTGGTCTAAGGTCGAATTATGCAGGTACGCGGCTGCATGGGCTGGTCAGGACTGTGCTTGCAAGAACACGTTTGATGATGATGAAGAGAAATC CGCCAATGGATTCGCTAATGAAAATGGCTCTGGGTACTTTCTGGAAGGTAGCAACAATTTGAGTAATGGTTTTGAGAACAATGGATACGGAATTAATGGT GTGGAGATTGAGCATGAGGATGGTGTTGTTGATCAAATAAGGGAATTGAAAATTGAGAGGGTTGGTTCGGGCGATCTGGAGTTGAAAGGGGTAAGGATCC CCCTGCCTTGGGAGATTTTGCAGCCGTTGTTGAGGATTTTGGGACACTGCCTGTTGGGGCCATTGAGTGGCCAAGATGTGAAAGATGCTGCTTCTGTGGC AGTAAGGCGATTGTATGCTAGAGGGTCTCATGATTTGGTTCCGCAGGCAATATTGGCCACGCAGAGCTTGATTAGGCTTGATAATAGAACAAGGGAGGCT GCAATGGTAGCAGCAACTACAAGTGTCCCGTCAAATGTGACTACGCCCAGCAAAGCTAAGAAACCTGAAGTTCTGTTGGTTTCAAAATTGCCTTTTGTGA TTGCGAACATGAGAAACACAGTACACTGCTGGTATCGTATCCCGAGTATCCAGGTGGAGACGGGACTTGAGGATTGTGGATTTAGAGTGGGGAAAGAAGA AGCACCGTGTGTGTATCGGCGATTTGATATATCTACCTACGTAGCTAGCTAG
AA sequence Show only first row Show all	>Lus10020420 pacid=23139557 polypeptide=Lus10020420 locus=Lus10020420.g ID=Lus10020420.BGIv1.0 annot-version=v1.0 MVEMKGLSSPSFESISNNRKQCRHNKATIVKVSKTRNNPGRIFYRCLWWTVRTCHTVGGNFGKQSSVESWQYSDRCAIAVHKAERRKPKVFTLKAELDVI TECRNKLSAELRDLEVAKHIPQPKESTVFLFSPLSSLSSATVTPSAYHPFPTDHRFSLHRHSCCPNAVSSLVKQLKSTPMDFSNHNKISYSPTSSSSSIS STPQPTTTTTSSSATAANTNSTAATSNDPMHSWWESISRARTRILVLNSILPPDPSSSFSLSSLADSDRPALSFLASPDAYSLFSSALLVPSSGSGSDPL CQWLYETYLSADPHLRLIVLSFVPLLTGIYLSRIHSSESTSSPSLAGFEAVLLAIYSTEVKSRAGKPVLAQIPDLSQPSLYHSPRNRQQRPTKSRPSVGV LSAPLEPQLAVKSTKRPIIVGVALDSYFKQISQMPSWSKVELCRYAAAWAGQDCACKNTFDDDEEKSANGFANENGSGYFLEGSNNLSNGFENNGYGING VEIEHEDGVVDQIRELKIERVGSGDLELKGVRIPLPWEILQPLLRILGHCLLGPLSGQDVKDAASVAVRRLYARGSHDLVPQAILATQSLIRLDNRTREA AMVAATTSVPSNVTTPSKAKKPEVLLVSKLPFVIANMRNTVHCWYRIPSIQVETGLEDCGFRVGKEEAPCVYRRFDISTYVAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64090			unknown protein		Lus10020420 [exp]	0	1
AT5G16510		RGP5	reversibly glycosylated protei...		Lus10020379 [exp]	1.4	0.9352
AT4G28230			unknown protein		Lus10031619 [exp]	2.8	0.9163
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10009842 [exp]	3.7	0.9253
AT4G32390			Nucleotide-sugar transporter f...		Lus10002023 [exp]	6.0	0.9217
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10007533 [exp]	7.7	0.9131
AT4G29870			Oligosaccharyltransferase comp...		Lus10035623 [exp]	10.4	0.9115
AT3G06470			GNS1/SUR4 membrane protein fam...		Lus10030547 [exp]	13.4	0.8878
AT3G61550			RING/U-box superfamily protein...		Lus10041079 [exp]	15.2	0.8658
AT1G61790			Oligosaccharyltransferase comp...		Lus10007647 [exp]	16.7	0.8996
AT5G36890		BGLU42	beta glucosidase 42 (.1.2)		Lus10020234 [exp]	16.9	0.8420

Compare expression of checked genes

Lus10020420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.