Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41480 267 / 7e-89 Peroxidase superfamily protein (.1) AT5G64120 265 / 1e-88 Peroxidase superfamily protein (.1) AT5G39580 258 / 7e-86 Peroxidase superfamily protein (.1.2) AT5G64110 248 / 1e-81 Peroxidase superfamily protein (.1) AT5G64100 228 / 5e-74 Peroxidase superfamily protein (.1) AT4G25980 217 / 6e-69 Peroxidase superfamily protein (.1) AT1G77100 197 / 2e-61 Peroxidase superfamily protein (.1) AT5G19880 196 / 2e-61 Peroxidase superfamily protein (.1) AT4G36430 186 / 2e-57 Peroxidase superfamily protein (.1) AT5G06720 182 / 6e-56 ATPA2 peroxidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007050 [exp] 434 / 2e-156 AT5G64120 215 / 6e-69 Peroxidase superfamily protein (.1) Lus10007051 [exp] 432 / 5e-154 AT2G41480 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10007052 [exp] 420 / 2e-149 AT2G41480 400 / 1e-140 Peroxidase superfamily protein (.1) Lus10020422 [exp] 303 / 6e-104 AT2G41480 252 / 7e-83 Peroxidase superfamily protein (.1) Lus10012684 [exp] 265 / 2e-88 AT2G41480 395 / 2e-138 Peroxidase superfamily protein (.1) Lus10020826 [exp] 249 / 7e-82 AT2G41480 375 / 1e-130 Peroxidase superfamily protein (.1) Lus10015555 [exp] 234 / 3e-76 AT2G41480 432 / 9e-153 Peroxidase superfamily protein (.1) Lus10028631 [exp] 184 / 8e-57 AT1G77100 328 / 6e-112 Peroxidase superfamily protein (.1) Lus10031548 [exp] 182 / 8e-56 AT1G05260 441 / 1e-156 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G125000 [exp] 317 / 7e-109 AT2G41480 419 / 7e-148 Peroxidase superfamily protein (.1) Potri.006G069600 [exp] 256 / 6e-85 AT2G41480 498 / 6e-179 Peroxidase superfamily protein (.1) Potri.018G131600 [exp] 241 / 5e-79 AT2G41480 478 / 4e-171 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 187 / 5e-58 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 187 / 5e-58 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 187 / 5e-58 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 187 / 5e-58 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 187 / 5e-58 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.011G027300 [exp] 185 / 4e-57 AT3G01190 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.007G019300 [exp] 184 / 6e-57 AT5G66390 507 / 0.0 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10020421 pacid=23139568 polypeptide=Lus10020421 locus=Lus10020421.g ID=Lus10020421.BGIv1.0 annot-version=v1.0 ATGGCGAAAATAGTCGGGATTTCGACGTTGTTTGTGTTTTGGCTTGTGATGGTTTTAGCCAACAGGTCCGCCGTTGATGCCCAAGGGACCAGGGTAGGCT TCTATTCCACCTCATCTTGCCCTGGTGTCGTTTCTTGTGCCGACATTCTCGCTCTTGCTGCCCGCGACTCTGTTGCCGTGACAAATGGGCCAAGATGGAC GGTGCCGACAGGGAGGAGAGACGGGAGGGTATCACTGGCATCGGACACAACAAACTTGCCGGCGTTTAATGACTCGGCCGCAGTTCAAATTAGCAAATAC AATCAGAAAGGACTTAACACTCAGGATCTTGTTGCCCTCTCTGGGGCCCACACAATAGGGACAGCTGCCTGCGCGGTGTTCCGATACAGGCTGTACAACT TTCCGGGCTCTACCTCTGGTGCTGACCCGACGCTCGACCCGGCGTTTGTTCCTCAACTGAGGGCTGTCTGCCCACAGAACGGAAATGCGGCAAGGAGGGT GGCCATGGACACTGGAAGCCCTAACCGATTCGACAATTCATACTACGCTAATTTGAGGAGCGGCCGGACTGTTTTGGAATCGGACTCTGTTCTGTGGACG GATGCCGGGACCAGAGTGATGGCACAGAGGTTCCTCGGGATCAGAGGATTGGCCGGCTTGACTTTCGCAGTGGAGTTCGCCAGATCAATGGTGAGGATGG GCAACATCGAAATCAAGAGCGGCGCTCAGGGAGAGATCCGACGTGTCTGCTCCGCCGTCAACTGA
AA sequence Show only first row Show all	>Lus10020421 pacid=23139568 polypeptide=Lus10020421 locus=Lus10020421.g ID=Lus10020421.BGIv1.0 annot-version=v1.0 MAKIVGISTLFVFWLVMVLANRSAVDAQGTRVGFYSTSSCPGVVSCADILALAARDSVAVTNGPRWTVPTGRRDGRVSLASDTTNLPAFNDSAAVQISKY NQKGLNTQDLVALSGAHTIGTAACAVFRYRLYNFPGSTSGADPTLDPAFVPQLRAVCPQNGNAARRVAMDTGSPNRFDNSYYANLRSGRTVLESDSVLWT DAGTRVMAQRFLGIRGLAGLTFAVEFARSMVRMGNIEIKSGAQGEIRRVCSAVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41480			Peroxidase superfamily protein...		Lus10020421 [exp]	0	1
					Lus10023874 [exp]	1.7	0.8995
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10009386 [exp]	2.8	0.8986
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10002936 [exp]	2.8	0.8939
AT4G21510			F-box family protein (.1)		Lus10011255 [exp]	9.2	0.8712
AT2G40600			appr-1-p processing enzyme fam...		Lus10034225 [exp]	9.9	0.8655
AT2G14960		GH3.1	Auxin-responsive GH3 family pr...		Lus10026600 [exp]	11.2	0.8860
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10018142 [exp]	12.5	0.8979
					Lus10008536 [exp]	13.4	0.8027
AT4G40050			Protein of unknown function (D...		Lus10023156 [exp]	15.0	0.7760
AT3G12960			unknown protein		Lus10011871 [exp]	15.2	0.7756

Compare expression of checked genes

Lus10020421 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.