Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64100 212 / 4e-67 Peroxidase superfamily protein (.1) AT4G25980 174 / 4e-52 Peroxidase superfamily protein (.1) AT5G64120 162 / 8e-48 Peroxidase superfamily protein (.1) AT5G64110 162 / 1e-47 Peroxidase superfamily protein (.1) AT2G41480 158 / 4e-46 Peroxidase superfamily protein (.1) AT5G39580 156 / 9e-46 Peroxidase superfamily protein (.1.2) AT2G38390 147 / 8e-42 Peroxidase superfamily protein (.1) AT2G38380 143 / 2e-40 Peroxidase superfamily protein (.1) AT2G18980 139 / 6e-39 Peroxidase superfamily protein (.1) AT4G37520 137 / 2e-38 Peroxidase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007050 [exp] 322 / 2e-111 AT5G64120 215 / 6e-69 Peroxidase superfamily protein (.1) Lus10020421 [exp] 286 / 3e-97 AT2G41480 266 / 9e-89 Peroxidase superfamily protein (.1) Lus10007051 [exp] 286 / 2e-96 AT2G41480 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10007052 [exp] 276 / 2e-92 AT2G41480 400 / 1e-140 Peroxidase superfamily protein (.1) Lus10020826 [exp] 244 / 2e-79 AT2G41480 375 / 1e-130 Peroxidase superfamily protein (.1) Lus10015555 [exp] 219 / 4e-70 AT2G41480 432 / 9e-153 Peroxidase superfamily protein (.1) Lus10012684 [exp] 172 / 1e-51 AT2G41480 395 / 2e-138 Peroxidase superfamily protein (.1) Lus10004163 [exp] 154 / 8e-45 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10026748 [exp] 154 / 1e-44 AT5G19890 402 / 6e-141 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G125000 [exp] 207 / 3e-65 AT2G41480 419 / 7e-148 Peroxidase superfamily protein (.1) Potri.006G069600 [exp] 151 / 1e-43 AT2G41480 498 / 6e-179 Peroxidase superfamily protein (.1) Potri.001G011300 [exp] 149 / 1e-42 AT3G49120 410 / 8e-144 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.004G023200 [exp] 148 / 1e-42 AT3G01190 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.019G063201 [exp] 147 / 3e-42 AT3G01190 412 / 4e-145 Peroxidase superfamily protein (.1) Potri.004G023100 [exp] 146 / 1e-41 AT3G01190 403 / 1e-141 Peroxidase superfamily protein (.1) Potri.011G027300 [exp] 145 / 3e-41 AT3G01190 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.018G131600 [exp] 144 / 6e-41 AT2G41480 478 / 4e-171 Peroxidase superfamily protein (.1) Potri.003G214500 [exp] 144 / 8e-41 AT5G19890 422 / 4e-149 Peroxidase superfamily protein (.1) Potri.002G065300 [exp] 142 / 4e-40 AT1G71695 468 / 2e-166 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10020422 pacid=23139603 polypeptide=Lus10020422 locus=Lus10020422.g ID=Lus10020422.BGIv1.0 annot-version=v1.0 ATGGGAAAGATGACGATATTGTTTGTGTTTTGGCTTGTAATGGTTGTAGCCAACAGGTCCCCCGTTGATGCCCAAGGGACTCGGGTAGGCTTCTATTCCA CTTCATGTCCACGAGCCGAGTCTATTGTCCGAGCAACGGTCCAGTCACATTTCAACTCCGACCCCACCATTGCCCCTGGGATATTAAGGATGCACTTTCA TGACTGTTTCGTCCACGGATGCGACGGTTCCATACTTCTCGACGGCGCCAACGCTGAGAAAACGGCCGGTGCCAATCAGGGAGGAGAGACGGGAGGGTAT CACTGGCATCGGACACAACAAACTTGCCGGCGTTTAATGACTCGGCCGCAGTTCAAATTAGCAAATACAATCAGAAAGGACTTAACACTCAGGATCTTGT TGCTCTCTCTGGTACGGGCCCACACAATAGGGACGGCTGCCTGCGCGGTTTTCCGGTACAGGCTGTACAACTTTCCGGGCTCTGCTTCTGGCGCCGACCC GACGCTCGACCCGGCTTTTGTTCCCCAACTGAGGGCCGTCTGCCCGCAAAACGGAAATGCGGCTAGGAGGGTGGCGATGGACACGGGAAGCCCTAACCGA TTTGACAATTCATACTATGCTAATTTGAGGAGCGGCCGAACTGTTCTTGAATCGGACTCTGTTCTGTGGACAGACGCCGGGACAAGAGTGATGGCACAGA GGTTCCTCGGGATCAGAGGATTGGCCGGCTTGACTTTCGCAGTGGAGTTCGCCAGATCAATGGTGAGGATGGGCAACATCGAAATCAAGAGCGGAGCCCA AGGTGAGATCCGGCGAGTCTGCTCCGCCGTCAATTGA
AA sequence Show only first row Show all	>Lus10020422 pacid=23139603 polypeptide=Lus10020422 locus=Lus10020422.g ID=Lus10020422.BGIv1.0 annot-version=v1.0 MGKMTILFVFWLVMVVANRSPVDAQGTRVGFYSTSCPRAESIVRATVQSHFNSDPTIAPGILRMHFHDCFVHGCDGSILLDGANAEKTAGANQGGETGGY HWHRTQQTCRRLMTRPQFKLANTIRKDLTLRILLLSLVRAHTIGTAACAVFRYRLYNFPGSASGADPTLDPAFVPQLRAVCPQNGNAARRVAMDTGSPNR FDNSYYANLRSGRTVLESDSVLWTDAGTRVMAQRFLGIRGLAGLTFAVEFARSMVRMGNIEIKSGAQGEIRRVCSAVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41480			Peroxidase superfamily protein...		Lus10020422 [exp]	0	1
AT1G01490			Heavy metal transport/detoxifi...		Lus10027523 [exp]	1.0	0.9554
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10014086 [exp]	2.4	0.9363
AT2G31945			unknown protein		Lus10013740 [exp]	7.7	0.9392
AT4G37710			VQ motif-containing protein (....		Lus10011555 [exp]	8.4	0.9226
AT5G19890			Peroxidase superfamily protein...		Lus10025535 [exp]	10.6	0.9089
AT2G01770		ATVIT1, VIT1	vacuolar iron transporter 1 (....		Lus10001589 [exp]	14.3	0.8984
AT4G29700			Alkaline-phosphatase-like fami...		Lus10000041 [exp]	14.8	0.9291
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10033582 [exp]	15.2	0.9071
AT1G79690		ATNUDT3	nudix hydrolase homolog 3 (.1)		Lus10041626 [exp]	15.5	0.8904
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10011958 [exp]	21.8	0.9081

Compare expression of checked genes

Lus10020422 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.