Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23945 143 / 9e-41 Eukaryotic aspartyl protease family protein (.1) AT4G30030 137 / 1e-38 Eukaryotic aspartyl protease family protein (.1) AT4G30040 133 / 4e-37 Eukaryotic aspartyl protease family protein (.1) AT5G33340 107 / 2e-27 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT1G64830 105 / 1e-26 Eukaryotic aspartyl protease family protein (.1) AT2G03200 105 / 1e-26 Eukaryotic aspartyl protease family protein (.1) AT4G12920 101 / 2e-25 UND UNDEAD, Eukaryotic aspartyl protease family protein (.1) AT2G28010 96 / 2e-23 Eukaryotic aspartyl protease family protein (.1) AT2G35615 96 / 3e-23 Eukaryotic aspartyl protease family protein (.1) AT1G31450 93 / 4e-22 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007053 [exp] 164 / 1e-50 AT4G30030 212 / 3e-66 Eukaryotic aspartyl protease family protein (.1) Lus10019960 [exp] 130 / 7e-36 AT2G23945 256 / 5e-81 Eukaryotic aspartyl protease family protein (.1) Lus10002612 [exp] 122 / 6e-33 AT5G33340 393 / 5e-134 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10011615 [exp] 120 / 2e-32 AT2G23945 224 / 5e-68 Eukaryotic aspartyl protease family protein (.1) Lus10020279 [exp] 120 / 4e-32 AT5G33340 393 / 3e-134 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10031450 [exp] 118 / 2e-31 AT4G30030 231 / 2e-71 Eukaryotic aspartyl protease family protein (.1) Lus10031449 [exp] 112 / 2e-29 AT2G23945 219 / 3e-66 Eukaryotic aspartyl protease family protein (.1) Lus10023451 [exp] 111 / 6e-29 AT2G23945 232 / 2e-71 Eukaryotic aspartyl protease family protein (.1) Lus10015486 [exp] 107 / 4e-27 AT2G23945 248 / 3e-76 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G179500 [exp] 173 / 3e-52 AT2G23945 412 / 3e-141 Eukaryotic aspartyl protease family protein (.1) Potri.018G106500 [exp] 129 / 5e-36 AT4G30030 150 / 2e-41 Eukaryotic aspartyl protease family protein (.1) Potri.003G087900 [exp] 107 / 1e-27 AT5G33340 430 / 8e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.014G114400 [exp] 103 / 5e-26 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G105300 [exp] 95 / 6e-23 AT2G35615 414 / 2e-142 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 94 / 1e-22 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 94 / 2e-22 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 90 / 5e-21 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.003G185175 [exp] 85 / 2e-19 AT1G79720 523 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.010G128200 [exp] 85 / 3e-19 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020425 pacid=23139585 polypeptide=Lus10020425 locus=Lus10020425.g ID=Lus10020425.BGIv1.0 annot-version=v1.0 ATGGACGGCATCTTTCAAGTATTCCTCGTCAGCTTCTCGATTGGGCTTCTTCCTGTGCCGCAGCTCGCCATCATGGACACAAGCAGCATCTTCACATGGA TTCAATGCTTTCCTTGCAAATCATGCTACAAACAAAAAAGTCAAATCTTTGACCCTTCTCGGTCTTCCACCTATTCCAAACTCCTCTTGTTGAGCCGCTC ATGCGACTACACCAATTCCCAGTTGTTCTGCGACAACCACGACACCTGCATATACGAACAGTTCTACGTCGACGGCTCCTCGTCCACCGGGAACATGGCT ACAGAACAACTAACATTTGAAACATCCGACCATGGCCTTGCGGTATTACGTAATGTGTTATTCGGTTGTGGCCATGAGAATATAGAGGCCGGTGCAAGGA CATGGACTGGTGTATTCGGCCTAGGAAGCTCTACCATCTCTATCTTTTCAAAGCTAGGCAACAGATTTTCATACTGCATCGGTAACGTCAACGACCCTAT GTGCAATTTCAATCGTCTGGCTCTAGGCGATACGGTGAGCCTGCAAGTAGGGTTGGCATCGGGGCGGATCGGGGCCGGTTAA
AA sequence Show only first row Show all	>Lus10020425 pacid=23139585 polypeptide=Lus10020425 locus=Lus10020425.g ID=Lus10020425.BGIv1.0 annot-version=v1.0 MDGIFQVFLVSFSIGLLPVPQLAIMDTSSIFTWIQCFPCKSCYKQKSQIFDPSRSSTYSKLLLLSRSCDYTNSQLFCDNHDTCIYEQFYVDGSSSTGNMA TEQLTFETSDHGLAVLRNVLFGCGHENIEAGARTWTGVFGLGSSTISIFSKLGNRFSYCIGNVNDPMCNFNRLALGDTVSLQVGLASGRIGAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23945			Eukaryotic aspartyl protease f...		Lus10020425 [exp]	0	1

Compare expression of checked genes

Lus10020425 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.