Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10840 569 / 0 TIF3H1 translation initiation factor 3 subunit H1 (.1.2) AT5G23540 53 / 2e-07 Mov34/MPN/PAD-1 family protein (.1.2) AT5G05780 49 / 4e-06 RPN8A, AE3, ATHMOV34 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) AT3G11270 45 / 5e-05 MEE34 maternal effect embryo arrest 34, Mov34/MPN/PAD-1 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007054 [exp] 666 / 0 AT1G10840 558 / 0.0 translation initiation factor 3 subunit H1 (.1.2) Lus10008033 [exp] 120 / 5e-32 ND / Lus10038713 [exp] 113 / 4e-30 ND / Lus10033128 [exp] 116 / 2e-27 AT1G74860 147 / 1e-38 unknown protein Lus10005983 [exp] 115 / 4e-27 AT3G18750 523 / 3e-178 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) Lus10007989 [exp] 115 / 4e-27 AT4G26190 247 / 3e-67 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10009403 [exp] 100 / 2e-23 AT2G44860 120 / 2e-33 Ribosomal protein L24e family protein (.1.2) Lus10008761 [exp] 93 / 4e-20 AT2G25010 79 / 1e-15 Aminotransferase-like, plant mobile domain family protein (.1) Lus10027047 [exp] 91 / 3e-19 AT1G17930 119 / 1e-28 Aminotransferase-like, plant mobile domain family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G233500 [exp] 594 / 0 AT1G10840 555 / 0.0 translation initiation factor 3 subunit H1 (.1.2) Potri.014G147100 [exp] 584 / 0 AT1G10840 545 / 0.0 translation initiation factor 3 subunit H1 (.1.2) Potri.002G127900 [exp] 55 / 4e-08 AT5G23540 567 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Potri.014G032900 [exp] 55 / 5e-08 AT5G23540 563 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Potri.008G065300 [exp] 46 / 4e-05 AT5G05780 568 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Potri.010G192200 [exp] 45 / 5e-05 AT5G05780 560 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Potri.008G065200 [exp] 44 / 0.0001 AT5G05780 568 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0366 [flax] [poplar] JAB PF01398 [flax] [poplar] JAB JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Representative CDS sequence Show only first row Show all	>Lus10020427 pacid=23139613 polypeptide=Lus10020427 locus=Lus10020427.g ID=Lus10020427.BGIv1.0 annot-version=v1.0 ATGGCGACAGCTCCAGCAACGAGGTCGTTCCTTCAGGTGGCAGCAACTGAGGAGGTTGCGCCCCCTCTCCGTGTTGTTCAGATCGAAGGATTGGTTATGC TGAAGATTATCAAACACTGCAAGGAATTCTCTCCTGCTCTGGTCACTGGCCAACTTCTTGGGCTGGACGTTGGCAGCGTGCTTGAAGTAACCAACTGCTT CCCTTTCCCGATCAGAGAGGAAGATGAAGAGGTTGAGGCAGATGGTGCAAATTACCAGCTTGAGATGATGAGATGCTTGAGGGAGGTTAATGTCGACAAT AATACAGTTGGATGGTACCAGTCAACTTTGATGGGCTCTTTCCAAACAGTGGAGCTGATTGAAACATTCATGAATTATCAGGAAAACATTAAAAGATGTG TGTGTATCATTTATGATCCATCAAGATCAAGCCAGGGCGTCCTGGCATTCAAGGCTCTGAAGCTTTCTGATTCATTCATGGAGCTATATCGCAGTAACAA CTTTACTGGAGAGAAGCTGAGGGAGAAGAACTTGTCATGGGTGGACATTTTTGAGGAAATTCCTATCAAGGTTTCGAATTCTGCTCTTATCAGTGCCTTT ATGACAGGCCTGGAAGATGATGCTCCTGTCACCCAGTGTGACTATGACCGTCTGCAATTATCAACCAATCCCTTCTTGGAGAGAAGTGCTGAATTTTTGA TTGAATGCATGGATGACTTATCAATGGAACAGCAGAAGTTCCAATACTATCATAGGAACCTGTCACGCCAGCAAGCTCAACAGCAAACATGGCTGCAGAA GAGAAGGGCTGAGAACATGACTCGCAAGGCTGCTGGTGAAGAGCCTTTGCCCGAGGAGGATCCTTCGAACCCAATATTCAAGCCAATTCCTGAGCCGTCG CGGTTGGATAGCTTCCTCATAACCAACCAAATCTCAAACTTCTGTAACCAAATCAATGGGGTTGCTGGGCCGAACTTCAGCAAACTGCTTCAACATTCAA ATGCAGTCTTATTCGATGATTTTCGCTTTCCTGTTTGCCTCGAGCAAGATCCATCCGGGATTGATTCATCTTTACAAATCACAAGCCATCTATCCGTCTT CATCCCTGAATTGTTCGGGTACATCATCACACTTAACCCGCCAAAACAGAAAATTACTGAGAACATCAAATCGCGTACAAAAGGAGGAGGTAAGCAGCAT AGCACTGACCCTATCGAGGAAGAGACTGATGGAATTCAAAAAATTCGAGGGAAGGGCAAGTCAATGGAAACTATTAATCGACTTGCCGAGCGTGCAATTA CTGCTTCTAATAGGAGAGAAGCACATAAGAAGAAGAAAACACAAAAGATCTACGAAACCCCTGAGCCTTTCCCCCCAATTATAAAATCCGGTATGCCAGG ATAG
AA sequence Show only first row Show all	>Lus10020427 pacid=23139613 polypeptide=Lus10020427 locus=Lus10020427.g ID=Lus10020427.BGIv1.0 annot-version=v1.0 MATAPATRSFLQVAATEEVAPPLRVVQIEGLVMLKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIREEDEEVEADGANYQLEMMRCLREVNVDN NTVGWYQSTLMGSFQTVELIETFMNYQENIKRCVCIIYDPSRSSQGVLAFKALKLSDSFMELYRSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAF MTGLEDDAPVTQCDYDRLQLSTNPFLERSAEFLIECMDDLSMEQQKFQYYHRNLSRQQAQQQTWLQKRRAENMTRKAAGEEPLPEEDPSNPIFKPIPEPS RLDSFLITNQISNFCNQINGVAGPNFSKLLQHSNAVLFDDFRFPVCLEQDPSGIDSSLQITSHLSVFIPELFGYIITLNPPKQKITENIKSRTKGGGKQH STDPIEEETDGIQKIRGKGKSMETINRLAERAITASNRREAHKKKKTQKIYETPEPFPPIIKSGMPG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10840		TIF3H1	translation initiation factor ...		Lus10020427 [exp]	0	1
AT1G77550			tubulin-tyrosine ligases;tubul...		Lus10027620 [exp]	3.2	0.9009
AT3G53740			Ribosomal protein L36e family ...		Lus10025342 [exp]	3.5	0.9033
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10041191 [exp]	6.5	0.8878
AT1G18080		RACK1A_AT, ATAR...	RECEPTOR FOR ACTIVATED C KINAS...		Lus10017569 [exp]	6.9	0.8991
AT2G46290			Transducin/WD40 repeat-like su...		Lus10021857 [exp]	8.5	0.8837
AT5G15610			Proteasome component (PCI) dom...		Lus10030706 [exp]	12.0	0.8904
AT5G15550			Transducin/WD40 repeat-like su...		Lus10024727 [exp]	13.3	0.8819
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10029824 [exp]	18.2	0.8820
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10013988 [exp]	19.1	0.8957
AT5G48240			unknown protein		Lus10036418 [exp]	23.1	0.8791

Compare expression of checked genes

Lus10020427 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.