Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34050 335 / 2e-117 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013954 [exp] 462 / 3e-167 AT2G34050 333 / 2e-116 unknown protein Lus10007055 [exp] 398 / 9e-143 AT2G34050 316 / 2e-110 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G052200 [exp] 371 / 1e-131 AT2G34050 348 / 2e-122 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06644 [flax] [poplar] ATP11 ATP11 protein
Representative CDS sequence Show only first row Show all	>Lus10020428 pacid=23139526 polypeptide=Lus10020428 locus=Lus10020428.g ID=Lus10020428.BGIv1.0 annot-version=v1.0 ATGCGACTGCTGTCATTTCAAAGAATATGGAGAACCTCAGAATTTTCTGCAAAATTCCTCTTTCAACCGAACCGCACTTTCACTTCTAGGTTGGTGAATT CGAGTCTCAGAAAACTGACGGGAGGAGGAGAAGGTGTTCCGGGGGGTTTCGCTAAATGGTCATCGTTAGGGTTCGTGAGGACTTCAAGCTTCGCATCTGG GTTCACTCCGTTGCAGCCGAAGTCCTTGGAGTCGATTATAGATGTTGAACGGGCCAAGCATAAATCACCTGAGGACCTCGCTTCCGCCTGGGACGATTAT CACATTGGGAGAGGTCACATTGGAGTTACCATGAAGGCCAACCTTTATAATTTGCTTAAGCAAAGAGCAGCAGATTGCAAGTACTTTGTTATCCCTATAT GGAGGGGATCTGGTTATACTACAATGTTTGCACAAGTGCAAATGCCGCACATTATCTTCACGGGTCTTGAAGACTACAAGGCAAGGGGAACTCAGGCATC TCCATACATCACCGTCTCCTTTTACACAGACTTTGCAGATAGTAAAGACTTAGTTCTCATACGAGGAGACATCGTCTTTACCAGCAAACTCAGCGACGAA GAGGCGGAATGGCTGCTAGAGACAGCTCAGTCTTTCTACCTGAATGACTCAAGGTACAAGCTCGTCGAACGGTTCAACAAGCAGACCAGGGATTTCGAGT TCAAGGATGTCCTTCAGGCACTGAATATGCCCATTATGTGA
AA sequence Show only first row Show all	>Lus10020428 pacid=23139526 polypeptide=Lus10020428 locus=Lus10020428.g ID=Lus10020428.BGIv1.0 annot-version=v1.0 MRLLSFQRIWRTSEFSAKFLFQPNRTFTSRLVNSSLRKLTGGGEGVPGGFAKWSSLGFVRTSSFASGFTPLQPKSLESIIDVERAKHKSPEDLASAWDDY HIGRGHIGVTMKANLYNLLKQRAADCKYFVIPIWRGSGYTTMFAQVQMPHIIFTGLEDYKARGTQASPYITVSFYTDFADSKDLVLIRGDIVFTSKLSDE EAEWLLETAQSFYLNDSRYKLVERFNKQTRDFEFKDVLQALNMPIM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34050			unknown protein		Lus10020428 [exp]	0	1
AT5G16890			Exostosin family protein (.1)		Lus10013787 [exp]	1.0	0.7895
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Lus10008115 [exp]	4.2	0.7399
AT2G35605			SWIB/MDM2 domain superfamily p...		Lus10034774 [exp]	7.5	0.6999
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Lus10002410 [exp]	9.4	0.7700
AT4G31250			Leucine-rich repeat protein ki...		Lus10026988 [exp]	16.9	0.6504
AT5G35390			Leucine-rich repeat protein ki...		Lus10022946 [exp]	18.2	0.7065
					Lus10014959 [exp]	18.5	0.6814
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Lus10032835 [exp]	19.6	0.7341
AT5G42560			Abscisic acid-responsive (TB2/...		Lus10024332 [exp]	19.7	0.6092
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022197 [exp]	20.7	0.7273

Compare expression of checked genes

Lus10020428 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.