Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18270 473 / 6e-167 CYP77A5P "cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene", cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007062 [exp] 664 / 0 AT3G18270 499 / 5e-177 "cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene", cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene (.1) Lus10030915 [exp] 43 / 0.0005 AT1G68890 1693 / 0.0 magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G054200 [exp] 543 / 0 AT3G18270 536 / 0.0 "cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene", cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene (.1) Potri.015G044400 [exp] 319 / 8e-108 AT3G18270 312 / 9e-105 "cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene", cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene (.1) Potri.010G135500 [exp] 42 / 0.0006 AT1G68890 1931 / 0.0 magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0227 [flax] [poplar] Enolase_N PF02746 [flax] [poplar] MR_MLE_N Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10020434 pacid=23139583 polypeptide=Lus10020434 locus=Lus10020434.g ID=Lus10020434.BGIv1.0 annot-version=v1.0 ATGGCGGCAGCAACAACCGCACCAGAGACAGCTTCAGGATTTGGGTTCAAGAACCTGGCCGAGACCTTCACTGTAAATGTGCATACAGCTGAGAGCCGGC CATTGAATGTGCCTCTGATTGCCCCTTTCACTATAGCTACTTCCAGGCTCGATCGGGTTGAGAATGTTGCGATTCGGATTGAGTTGAGTAATGGCTGTGT CGGATGGGGTGAAACCCCAATTCTTCCCTTTGTTACTGCAGAGGATCAGCCTACAGCTTTGGCCATGGCTGCTCAAGCTTGTGAGGCGCTCAAGAACACT CACCCTATGACTTTGGCCTCCGTTCTGGACATGATCGGTGGCCTTCTTCCTGGCCATGAATTTGCTTCTGTGAGGGCTGGAGTAGAAATGGCCCTAATTG ACGCTGCGGCTACAAGCATTGATGTACCTCTTTGGAGACTATCCGTTGATTTTCAATTGCTTGCCTTGAAACAAAGTCCTGATGCTGCTGAATTGGCTTC CAAGTACCGGGATCAAGGATTTAAAATTCTGAAGCTCAAAGTTGGAATGAATCTCAATGCTGACATACAAGTTCTTCAAGCAATCCGAGCAGTTCACCCT GATTGCTCCTTCATCTTGGATGCTAATGAGGGCTACAAGTCTGATGAAGCTATTCAAGTTCTTGAGAAATTACACGGGATAGGGGTGGTACCCGTTCTTT TCGAACAACCGGTCCATAGAGACGACTGGGAAGGCCTTGGTCAAGTTACTCGCGTAGCAAAGCAAAAATATGGGACGTCAGTTGCAGCTGACGAAAGTTG CCGGAGTATAAGTGATGCGAAGAGAATAGCCAGTGATGGTCTTGCAGATGTTATTAACATAAAACTTGCCAAAGTTGGTGTAATGGCTGCACTTGAGATA ATTGAGGAGGCGAGGGAGTCTGGGTTGGATCTGATGATCGGTGGTATGGTTGAGACCAGATTAGCTATGGGTTTTGCTGGTCATCTTGCTGCTGGTCTTG GATGTTTCAAGTTCGTTGATCTCGATACTCCAATCTTGCTTGCTGAAGATCCGGTATTTGAAGGTTATAAAGTAGCTGATGGTGCGGTGTACGAGTTCTT GAATGCTAGAGGTCACGGAGGTTTCCTTCACTGGGGCACTATAACTGGTTGA
AA sequence Show only first row Show all	>Lus10020434 pacid=23139583 polypeptide=Lus10020434 locus=Lus10020434.g ID=Lus10020434.BGIv1.0 annot-version=v1.0 MAAATTAPETASGFGFKNLAETFTVNVHTAESRPLNVPLIAPFTIATSRLDRVENVAIRIELSNGCVGWGETPILPFVTAEDQPTALAMAAQACEALKNT HPMTLASVLDMIGGLLPGHEFASVRAGVEMALIDAAATSIDVPLWRLSVDFQLLALKQSPDAAELASKYRDQGFKILKLKVGMNLNADIQVLQAIRAVHP DCSFILDANEGYKSDEAIQVLEKLHGIGVVPVLFEQPVHRDDWEGLGQVTRVAKQKYGTSVAADESCRSISDAKRIASDGLADVINIKLAKVGVMAALEI IEEARESGLDLMIGGMVETRLAMGFAGHLAAGLGCFKFVDLDTPILLAEDPVFEGYKVADGAVYEFLNARGHGGFLHWGTITG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18270		CYP77A5P	"cytochrome P450, family 77, s...		Lus10020434 [exp]	0	1
AT5G62720			Integral membrane HPP family p...		Lus10036673 [exp]	4.4	0.7768
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Lus10037321 [exp]	7.1	0.8195
AT1G48270		GCR1	G-protein-coupled receptor 1 (...		Lus10018333 [exp]	13.4	0.8046
AT5G48560	bHLH	bHLH078	basic helix-loop-helix (bHLH) ...		Lus10002337 [exp]	37.9	0.7831
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10005767 [exp]	39.2	0.7702
					Lus10015694 [exp]	44.7	0.7858
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10030819 [exp]	59.1	0.7793
AT1G30300			Metallo-hydrolase/oxidoreducta...		Lus10038519 [exp]	80.8	0.7671
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10000624 [exp]	106.8	0.7412
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10033356 [exp]	145.2	0.7432

Compare expression of checked genes

Lus10020434 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.