Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33630 355 / 1e-112 EX1 EXECUTER1, Protein of unknown function (DUF3506) (.1), Protein of unknown function (DUF3506) (.2) AT1G27510 205 / 5e-57 Protein of unknown function (DUF3506) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007064 [exp] 563 / 0 AT4G33630 667 / 0.0 EXECUTER1, Protein of unknown function (DUF3506) (.1), Protein of unknown function (DUF3506) (.2) Lus10039967 [exp] 197 / 7e-54 AT1G27510 621 / 0.0 Protein of unknown function (DUF3506) (.1) Lus10027696 [exp] 196 / 1e-53 AT1G27510 635 / 0.0 Protein of unknown function (DUF3506) (.1) Lus10042125 [exp] 141 / 4e-35 AT1G27510 358 / 7e-116 Protein of unknown function (DUF3506) (.1) Lus10002370 [exp] 94 / 2e-20 AT1G27510 164 / 2e-45 Protein of unknown function (DUF3506) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G043100 [exp] 761 / 0 AT4G33630 674 / 0.0 EXECUTER1, Protein of unknown function (DUF3506) (.1), Protein of unknown function (DUF3506) (.2) Potri.012G079700 [exp] 207 / 6e-58 AT1G27510 599 / 0.0 Protein of unknown function (DUF3506) (.1) Potri.015G075000 [exp] 204 / 1e-56 AT1G27510 582 / 0.0 Protein of unknown function (DUF3506) (.1) Potri.012G082300 [exp] 46 / 5e-05 ND / Potri.015G078100 [exp] 44 / 0.0002 AT1G06110 48 / 3e-06 SKP1/ASK-interacting protein 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12014 [flax] [poplar] DUF3506 Domain of unknown function (DUF3506)
Representative CDS sequence Show only first row Show all	>Lus10020435 pacid=23139615 polypeptide=Lus10020435 locus=Lus10020435.g ID=Lus10020435.BGIv1.0 annot-version=v1.0 ATGGCTTCGATTTCGGCCCCGACTCCTCCCGTTCGCAACCTCATCTTCCACAGCTCTCACCGCCACCCTAAACGCCGTCGTTCCTCCCTCTCCCCTTCTC CTTCCTCTAGGTTTCCCGATTCTTCTCTCTGTCGCTGTACCAATTCATCTTCCTCCTCGTCGGATAATCAGGGCTGGCGTTGGGACGCTGTGATTCAGGA CGTCTTCAAAAGCGCGATGAAGACTTTCGATTCTTTTATCGGCAATCGACCGCCGGATGGCCTGGATAATGGAGATATTGTTAAAAGAGCGAGCCACGTA GGACGTGAAGAGCAAAGAAGTGGTGGTGAGGAGTGGGACTGGGACCGGTGGAAGAAGCATTTCGAGGAAGTCGATGACCAGGAGCGACTCGTCTCTGTGT TAAAGTCCCAGTTAAGTTCTGCTGTGAATAGCGAGGATTATGGAGATGCTTCTAGGATTAAGGTTGCACTTGCTGCTGCTGCAACAAATGACACTGTTGG TAAAGTAATAAGGAATCTGTTGAAAGCAGTAGCTGAAGAGCGTTATCAGGACGCAGCTTTCTTGCGGGATCATGCTGGTGCTGGATTGGTCGGATGGTGG TCTGGAATCTCTGATGAAGATTGTGATCCTCATGGCTTAATTGTTCGCATAACTGCAGAACATGGGAGATATGTTGCAAGAAGTTATAGCCCACGCCAGC TTGCAACAGCTACAACGGGTGTTCCTCTTTTCGAGATCTTTCTTATTATGAATAAAAAAGGAGAATATAAGCAACAGGCTGTTTACCTAAAAAGGAAAGA GCGTCCCCAAGATCCTTCAATGTTGTCATCCAAATCATCAAGTGGACCAAGTCGCTTAAGTCGTTCTGGACCAACCCAAGAGGAAGATGATCTTTTTGTT GTGACCTCCGATGAGACTGAGGATGATGATAATACAGAAGATGGGTCTGATCCAGCCGAGGGTTTTACTGGTTTTAACAATCTCTTTCGAGATATGATAC CTGGTGTCAAAGTTAAGGTTTTAAAAGTGACAACACCTGCAATGATGGACAGGGATTTCATAGCAAAGGTGATAGATGATTTGGTGGATGATGATGAAGA TGAAGACGACGTAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGATGCTGATGATGAGGATGATGAGGATGAAAGTTTGGAA GGCGAAGATGAGATTAAGGGGGAAAGTGAGGAAGAAAGAAACGAGATTGATATAGATGCTGCCAATGAGATGATTGATAATGTAGCTAATGGCGAAATAT CAATCAAGGTTGTGGTGGAAGGTCTTGCACAAAAATCTTCAGCCTCTGCGGGTGGTGAAGATTGTGTCAGGGTACCTGCTAAGTTAGAGAGAAAGGGGCG CATGTCATTTTCTTTGTCAATAGAAAAAGAGACCAACAGACAGGATGCTGCTGCCAAGGAGTTGATTGCTGCGGAGAAAAAAGGAAAGCTTCAAGGTCAA CGCAGTCTGGACCAAGTGATGTTTGATCTTGCTAAATTCATTGGTAAAGAGAAGATTCCGTTGAAGGTCCTGAAAGATCTCAGTGAACTTCTAAGTGTTA GTCTCAGTCAAGCTCAAAACCGTCAACCACTGTCACGCTCTACAACGTTTCATCGAATTGATGTATCAGCATCTCCTGATCCTTTGACTGGACTGTATAT TGGTGCACGTGGTTTGTACACTTCAGAAGTGATACACTTGCAACGGAAAGTTGGTCAATGGAAAGAGGATAGTGGGTCTAACTTGAAGGAACCTCCGAGA CTTGAGTTCTATGAATATGTAGAAGCTGTAAAGTTAACTGGAGATCCTTATGTTCCCGCTGGAGAGGTGGCATTTCGTGCCAAAGTGGGTAAAAGATACC AGCTTCCACACAAAGGTATCATTCCTGAAGAATTTGGAGTGATCGCTAGATATAAAGGACAAGGGAGGCTTTCTGATCCAGGATTTGGGAACCCACGTTG GGTTGATGGTGAACTTGTTATTCTCGATGGGAAGTACGTTAAAGGAGGACCTGTTATCGGGTTCGTGTATTGGGCTCCTGAATATCACTTTCTGGTGTTC TTCAACCGCCTGAGGCTTCCGTAG
AA sequence Show only first row Show all	>Lus10020435 pacid=23139615 polypeptide=Lus10020435 locus=Lus10020435.g ID=Lus10020435.BGIv1.0 annot-version=v1.0 MASISAPTPPVRNLIFHSSHRHPKRRRSSLSPSPSSRFPDSSLCRCTNSSSSSSDNQGWRWDAVIQDVFKSAMKTFDSFIGNRPPDGLDNGDIVKRASHV GREEQRSGGEEWDWDRWKKHFEEVDDQERLVSVLKSQLSSAVNSEDYGDASRIKVALAAAATNDTVGKVIRNLLKAVAEERYQDAAFLRDHAGAGLVGWW SGISDEDCDPHGLIVRITAEHGRYVARSYSPRQLATATTGVPLFEIFLIMNKKGEYKQQAVYLKRKERPQDPSMLSSKSSSGPSRLSRSGPTQEEDDLFV VTSDETEDDDNTEDGSDPAEGFTGFNNLFRDMIPGVKVKVLKVTTPAMMDRDFIAKVIDDLVDDDEDEDDVEEEEEEEEEEEEEEEEDADDEDDEDESLE GEDEIKGESEEERNEIDIDAANEMIDNVANGEISIKVVVEGLAQKSSASAGGEDCVRVPAKLERKGRMSFSLSIEKETNRQDAAAKELIAAEKKGKLQGQ RSLDQVMFDLAKFIGKEKIPLKVLKDLSELLSVSLSQAQNRQPLSRSTTFHRIDVSASPDPLTGLYIGARGLYTSEVIHLQRKVGQWKEDSGSNLKEPPR LEFYEYVEAVKLTGDPYVPAGEVAFRAKVGKRYQLPHKGIIPEEFGVIARYKGQGRLSDPGFGNPRWVDGELVILDGKYVKGGPVIGFVYWAPEYHFLVF FNRLRLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33630		EX1	EXECUTER1, Protein of unknown ...		Lus10020435 [exp]	0	1
AT1G12680		PEPKR2	phosphoenolpyruvate carboxylas...		Lus10041132 [exp]	1.7	0.8639
AT4G37440			unknown protein		Lus10014864 [exp]	3.7	0.8452
AT1G12450			SNARE associated Golgi protein...		Lus10006674 [exp]	4.2	0.8441
AT1G57790			F-box family protein (.1)		Lus10017027 [exp]	5.7	0.8165
AT5G24000			Protein of unknown function (D...		Lus10039272 [exp]	6.2	0.7926
AT1G80400			RING/U-box superfamily protein...		Lus10023112 [exp]	6.5	0.8193
AT5G10080			Eukaryotic aspartyl protease f...		Lus10019678 [exp]	6.6	0.7741
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Lus10043200 [exp]	6.9	0.8319
AT5G06140		ATSNX1	ARABIDOPSIS THALIANA SORTING N...		Lus10016994 [exp]	10.4	0.7848
AT3G59910			Ankyrin repeat family protein ...		Lus10010581 [exp]	10.5	0.8271

Compare expression of checked genes

Lus10020435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.