Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64370 630 / 0 PYD3, BETA-UP PYRIMIDINE 3, beta-ureidopropionase (.1) AT2G27450 87 / 5e-19 CPA, ATNLP1, NLP1 nitrilase-like protein 1 (.1.2) AT5G12040 54 / 7e-08 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) AT3G44320 48 / 7e-06 AtNIT3, NIT3 nitrilase 3 (.1) AT3G44300 48 / 9e-06 AtNIT2, NIT2 nitrilase 2 (.1) AT4G08790 47 / 1e-05 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) AT5G22300 46 / 4e-05 AtNIT4, NIT4 nitrilase 4 (.1) AT3G44310 42 / 0.0005 NITI, NIT1, ATNIT1 A. THALIANA NITRILASE 1, nitrilase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007065 [exp] 762 / 0 AT5G64370 673 / 0.0 PYRIMIDINE 3, beta-ureidopropionase (.1) Lus10020627 [exp] 88 / 3e-19 AT2G27450 556 / 0.0 nitrilase-like protein 1 (.1.2) Lus10004862 [exp] 69 / 8e-13 AT2G27450 531 / 0.0 nitrilase-like protein 1 (.1.2) Lus10026464 [exp] 57 / 8e-09 AT5G12040 526 / 0.0 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) Lus10005201 [exp] 53 / 2e-07 AT5G22300 559 / 0.0 nitrilase 4 (.1) Lus10013313 [exp] 51 / 8e-07 AT5G22300 561 / 0.0 nitrilase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G115900 [exp] 653 / 0 AT5G64370 720 / 0.0 PYRIMIDINE 3, beta-ureidopropionase (.1) Potri.004G201400 [exp] 87 / 7e-19 AT2G27450 548 / 0.0 nitrilase-like protein 1 (.1.2) Potri.016G074200 [exp] 52 / 4e-07 AT5G22300 358 / 1e-121 nitrilase 4 (.1) Potri.006G207700 [exp] 50 / 2e-06 AT5G22300 369 / 2e-126 nitrilase 4 (.1) Potri.006G222900 [exp] 50 / 2e-06 AT5G12040 479 / 5e-170 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) Potri.004G199600 [exp] 45 / 8e-05 AT5G22300 578 / 0.0 nitrilase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00795 [flax] [poplar] CN_hydrolase Carbon-nitrogen hydrolase
Representative CDS sequence Show only first row Show all	>Lus10020436 pacid=23139569 polypeptide=Lus10020436 locus=Lus10020436.g ID=Lus10020436.BGIv1.0 annot-version=v1.0 ATGGAGAAAACTGAGGCGGTTGTTGTTGTAGATGAAACTTGCAGCAGTAATGGATCGCAACCCAGTAGCGGTGGAGATGGATCAATCTGTGGGTACGACT CGCTTCATCAGCTCCTCAGCTCCAATCTCAAGCCCCATCTCTTCCAGGAAGTCAGCCGCTTGATTCTGGGGTTGAATTGCGGCAAAGCACTTCATACACT TGCAATCACAGAGCCTGCAAAGGCACTCTCCAACCAACATGATTTTGACCTTCAGGCCTTTGGATTCAGTGCTGATAGAGAGGAGTTGCGAGAACCTCGG GTAGTCAGGGTGGGTCTTATCCAGAACTCAATAGCTCTTCCAACAACTGTCAGCTATTCAGATCAAAAGAAAGCCATCTTTCAGAAATTGAAGCCAATTA TTGAAGCTGCTGCTTCTTCAGCTGAAGCATGGATGATGCCATTTGCTTTCTGTACTAGGGAGAAGAAATGGTGTGAACTTGCAGAACCTGTTGATGGAGA ATCGACGAAATTCCTACAGGAATATGCACGTAAGTACAATATGGTTATCGTAAGTTCGATTCTGGAGAGAGATGAAAACCATGGGGATACCCTTTGGAAC ACTGCAATTATCATTGGCAATCATGGGAACATAATTGGGAAGCACCGAAAGAATCATATTCCTAGAGTTGGTGACTTCAATGAGAGCACATATTATATGG AAGGAAATACCGGGCATCCCGTGTTTGAAACAGCGTATGGCAAAATCAGTGTCAACATTTGTTACGGAAGGCACCATCCATTGAATTGGTTAGCATTCGG CTTGAATGGTGCAGAGATAGTCTTCAATCCTTCAGCCACGGTTGGGGAGCTTAGTGAACCAATGTGGCCCATTGAGGCTCGTAATGCAGCAATAGCTAAC AGCTATTTCGTCGGGTCAATCAATCGTGTGGGGACTGAAGTATTCCCCAATGCATTCACGTCCGTCGATGGAAAGCCACAGCACAAAGATTTCGGCCATT TTTATGGGTCGAGTCATTTTTCAGCACCAGATGCTTCTTGCACGCCCTCACTATCTCGCCACAAAGATGGACTGATGATTGCTGACATGGATCTTAACCT CTGTAGACAGCTGAAAGACAAGTGGGGATTCCGAATGACTGCTCGATATGATATGTATGCTGACATGCTCACCCGATATGTGAGTCCAGATTTCAAACCC CAGGTCATATCTGACCCTTTGTTACACAAGTAA
AA sequence Show only first row Show all	>Lus10020436 pacid=23139569 polypeptide=Lus10020436 locus=Lus10020436.g ID=Lus10020436.BGIv1.0 annot-version=v1.0 MEKTEAVVVVDETCSSNGSQPSSGGDGSICGYDSLHQLLSSNLKPHLFQEVSRLILGLNCGKALHTLAITEPAKALSNQHDFDLQAFGFSADREELREPR VVRVGLIQNSIALPTTVSYSDQKKAIFQKLKPIIEAAASSAEAWMMPFAFCTREKKWCELAEPVDGESTKFLQEYARKYNMVIVSSILERDENHGDTLWN TAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAYGKISVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIAN SYFVGSINRVGTEVFPNAFTSVDGKPQHKDFGHFYGSSHFSAPDASCTPSLSRHKDGLMIADMDLNLCRQLKDKWGFRMTARYDMYADMLTRYVSPDFKP QVISDPLLHK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64370		PYD3, BETA-UP	PYRIMIDINE 3, beta-ureidopropi...		Lus10020436 [exp]	0	1
AT5G64370		PYD3, BETA-UP	PYRIMIDINE 3, beta-ureidopropi...		Lus10007065 [exp]	1.4	0.9622
AT1G62040		ATG8C	autophagy 8c, Ubiquitin-like s...		Lus10015563 [exp]	1.7	0.9672
AT4G28290			unknown protein		Lus10039825 [exp]	3.2	0.9481
AT4G29890			choline monooxygenase, putativ...		Lus10032689 [exp]	5.7	0.9509
AT3G22200		HER1, GABA-T, P...	POLLEN-PISTIL INCOMPATIBILITY ...		Lus10010465 [exp]	6.2	0.9478
AT4G22310			Uncharacterised protein family...		Lus10023745 [exp]	8.1	0.9548
AT4G26060			Ribosomal protein L18ae family...		Lus10027625 [exp]	8.1	0.9526
AT1G13195			RING/U-box superfamily protein...		Lus10006253 [exp]	8.8	0.9587
AT1G44770			unknown protein		Lus10014131 [exp]	10.4	0.9578
AT5G41210		GSTU12, GST10, ...	glutathione S-transferase THET...		Lus10008021 [exp]	10.6	0.9472

Compare expression of checked genes

Lus10020436 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.