Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57810 283 / 2e-94 Cysteine proteinases superfamily protein (.1.2.3) AT2G38025 78 / 1e-16 Cysteine proteinases superfamily protein (.1) AT2G27350 49 / 3e-06 OTLD1 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015803 [exp] 223 / 3e-73 AT3G57810 215 / 3e-71 Cysteine proteinases superfamily protein (.1.2.3) Lus10037002 [exp] 223 / 4e-73 AT3G57810 213 / 2e-70 Cysteine proteinases superfamily protein (.1.2.3) Lus10008986 [exp] 192 / 5e-59 AT3G57810 187 / 9e-58 Cysteine proteinases superfamily protein (.1.2.3) Lus10028840 [exp] 192 / 7e-58 AT3G57810 194 / 4e-59 Cysteine proteinases superfamily protein (.1.2.3) Lus10027758 [exp] 64 / 1e-11 AT2G38025 227 / 4e-75 Cysteine proteinases superfamily protein (.1) Lus10005193 [exp] 50 / 2e-06 AT2G27350 549 / 0.0 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G050900 [exp] 384 / 8e-134 AT3G57810 301 / 5e-101 Cysteine proteinases superfamily protein (.1.2.3) Potri.006G057400 [exp] 377 / 2e-131 AT3G57810 308 / 3e-104 Cysteine proteinases superfamily protein (.1.2.3) Potri.008G177400 [exp] 226 / 1e-74 AT3G57810 223 / 6e-74 Cysteine proteinases superfamily protein (.1.2.3) Potri.010G234300 [exp] 205 / 5e-64 AT3G57810 195 / 9e-61 Cysteine proteinases superfamily protein (.1.2.3) Potri.008G026100 [exp] 205 / 6e-64 AT3G57810 197 / 2e-61 Cysteine proteinases superfamily protein (.1.2.3) Potri.016G110400 [exp] 91 / 3e-21 AT2G38025 276 / 1e-94 Cysteine proteinases superfamily protein (.1) Potri.010G057750 [exp] 47 / 7e-07 AT3G57810 52 / 1e-09 Cysteine proteinases superfamily protein (.1.2.3) Potri.009G160100 [exp] 50 / 1e-06 AT2G27350 440 / 3e-150 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Potri.004G196800 [exp] 49 / 2e-06 AT2G27350 458 / 3e-157 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF02338 [flax] [poplar] OTU OTU-like cysteine protease
Representative CDS sequence Show only first row Show all	>Lus10020438 pacid=23139590 polypeptide=Lus10020438 locus=Lus10020438.g ID=Lus10020438.BGIv1.0 annot-version=v1.0 ATGATAGTCTGCTCTTCTGTGACTTCATGTACAAACCATGTTGTTTGCCTGAGAGGGCGTGTTCGACACATGGGCTCAGATATTCTCGACGTGATGTCCA AAGGACAACCCAGTTATACTCGCTTGTCTACCTCAAAACCGTTCTCTAGTCCATCTACCATTCATTTTCACACTGTCCGGAACAGCTGCTATGGATCCTG CTCATCTGGTCCGAAGAGTAGTTTACTATCATTAACTGTTAAAAATTCGGTTACTGCTCGCAGTTCTATCCAGAGATATTTGAACATCTCATTGCCATGC CGAAACATGAGCATGGGGCTATCAATGTCAAAGAATGGAATGATTTCCAAAATCAGGGGTAACTCGGGAACTATATCCTGGTCACAGGGGTGTACCTCTA GTGGCTTAATCTTCGGTACCTTGGTTTGTTGTTCGAGCTCTGAACCTGCATATTCTGAAGCCCCATTGAATAAGAAAGATGAAAATTCCAATGGAAGGAA AATATACACCGACTATACCATAACTGGGATACCTGGAGACGGAAGGTGTTTGTTTCGTTCTGTGGCTCATGGGGCTTGTGTACGAGCTGGAAAGTTACCG CCAAGTGAAAGCATCCAGAGGGAATTAGCAGACGACCTGCGCAATAAAATTGCTGATGAGTTTATCAAGAGAAGACAAGAGACTGAATGGTTTGTAGAAG GTGATTTTGACACTTACGTAGCACAAATAAGGAAGCCGCATGTGTGGGGAGGTGAGCCAGAATTGTTGATGGCATCACATGTTCTCAAGACCCCTATCAG CGTGTATATGTACGACGAGAAATCTGGTGGGTTGATATCGATAGCAGAATATGGCGAGGAATATGGGAAGGGCAATCCAATTAGAGTACTCTACCATGGT TGTGGACACTATGATGCTTTACAGATTCCTGGAAGAAAAGCTGGTAAATCTAAACTCTAG
AA sequence Show only first row Show all	>Lus10020438 pacid=23139590 polypeptide=Lus10020438 locus=Lus10020438.g ID=Lus10020438.BGIv1.0 annot-version=v1.0 MIVCSSVTSCTNHVVCLRGRVRHMGSDILDVMSKGQPSYTRLSTSKPFSSPSTIHFHTVRNSCYGSCSSGPKSSLLSLTVKNSVTARSSIQRYLNISLPC RNMSMGLSMSKNGMISKIRGNSGTISWSQGCTSSGLIFGTLVCCSSSEPAYSEAPLNKKDENSNGRKIYTDYTITGIPGDGRCLFRSVAHGACVRAGKLP PSESIQRELADDLRNKIADEFIKRRQETEWFVEGDFDTYVAQIRKPHVWGGEPELLMASHVLKTPISVYMYDEKSGGLISIAEYGEEYGKGNPIRVLYHG CGHYDALQIPGRKAGKSKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57810			Cysteine proteinases superfami...		Lus10020438 [exp]	0	1
AT1G12410		EMB3146, CLP2, ...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10004319 [exp]	5.2	0.9242
AT5G40160		EMB139, EMB506	embryo defective 506, EMBRYO D...		Lus10014522 [exp]	8.1	0.8872
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10043145 [exp]	8.3	0.9150
AT3G63510			FMN-linked oxidoreductases sup...		Lus10039605 [exp]	10.2	0.8756
AT5G40160		EMB139, EMB506	embryo defective 506, EMBRYO D...		Lus10032165 [exp]	12.4	0.9057
AT3G60370			FKBP-like peptidyl-prolyl cis-...		Lus10042897 [exp]	15.0	0.9194
AT1G65260		VIPP1, PTAC4	VESICLE-INDUCING PROTEIN IN PL...		Lus10027068 [exp]	15.5	0.9112
AT5G44600			S-adenosyl-L-methionine-depend...		Lus10001217 [exp]	16.6	0.9131
AT1G60600		ABC4	ABERRANT CHLOROPLAST DEVELOPME...		Lus10032658 [exp]	20.3	0.9002
AT4G38160		PDE191	pigment defective 191, Mitocho...		Lus10013854 [exp]	20.3	0.9134

Compare expression of checked genes

Lus10020438 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.