Plant FIBer expression Database

Lus10020442 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G33625 239 / 6e-81 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007070
[exp]
305 / 6e-107 AT4G33625 261 / 2e-89 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G043200
[exp]
249 / 8e-85 AT4G33625 237 / 5e-80 unknown protein
Potri.007G115800
[exp]
218 / 9e-73 AT4G33625 173 / 5e-55 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08507 COPI_assoc COPI associated protein
Representative CDS sequence
>Lus10020442 pacid=23139545 polypeptide=Lus10020442 locus=Lus10020442.g ID=Lus10020442.BGIv1.0 annot-version=v1.0
ATGGCTACGAACCAAGACACTGAAGGATTAACCGCAGCAGATGACGCACCGCCGCTCCCTCGGCTTCCCTCCCCCAGCCGCTTCACCTCTAGGCCCGACC
CCTTTTTGGTGGTCTGTAGGTGCTTTAGCTTTGTTACCGCAGTCACCGCCATTCTATGTATCGCCGTCAACATTATCTCTGCCGTTCGCTCCTTTAAGGA
CGGATCCGATATATTCGATGGAATCTTCAGGTGCTACGCTGTGGTGATCGCGTTCGTTGTGATTTTGGTGGAGACCGAGTGGGCATTCATTCTCAAGTTC
TGGAAGGTGCTTGAGTATTGGGCAGGCAGGGGCATGCTGCAGATCTTTGTTGCAGTTATGACGAGAGCTTTCCCAAACTATCGGAACCATAAGGAGCTTG
TTCTTCTTCAGAATATTGCAAGCTACATGCTCCTTGCCTGTGGTTTGGTCTATATCGTTTCAGGAATCCTATGCATTGGGTTGCTTAAAAGAGACAGACA
GAAAAAGGAGATAACTAGGGAGCAGGCAGCCAAAGATTTGGAGGAATTGGAGCGAAGAAGAGAAGAACTTGAACAGTTACTCGTGCCGGAAAGAGTTTGA
AA sequence
>Lus10020442 pacid=23139545 polypeptide=Lus10020442 locus=Lus10020442.g ID=Lus10020442.BGIv1.0 annot-version=v1.0
MATNQDTEGLTAADDAPPLPRLPSPSRFTSRPDPFLVVCRCFSFVTAVTAILCIAVNIISAVRSFKDGSDIFDGIFRCYAVVIAFVVILVETEWAFILKF
WKVLEYWAGRGMLQIFVAVMTRAFPNYRNHKELVLLQNIASYMLLACGLVYIVSGILCIGLLKRDRQKKEITREQAAKDLEELERRREELEQLLVPERV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G33625 unknown protein Lus10020442
[exp]
0 1
AT3G55420 unknown protein Lus10023413
[exp]
3.2 0.8115
AT1G50010 TUA2 tubulin alpha-2 chain (.1) Lus10035422
[exp]
5.5 0.8468
AT4G08685 SAH7 Pollen Ole e 1 allergen and ex... Lus10008615
[exp]
7.2 0.8399
AT5G61250 ATGUS1 glucuronidase 1 (.1.2) Lus10036962
[exp]
8.9 0.8067
AT4G36750 Quinone reductase family prote... Lus10014325
[exp]
9.5 0.8056
AT5G52060 ATBAG1 BCL-2-associated athanogene 1 ... Lus10027420
[exp]
11.5 0.8119
AT1G05170 Galactosyltransferase family p... Lus10015107
[exp]
13.2 0.8111
AT4G12420 SKU5 Cupredoxin superfamily protein... Lus10004339
[exp]
14.3 0.7641
AT5G11710 ENTH/VHS family protein (.1) Lus10007460
[exp]
14.7 0.8355
AT2G18910 hydroxyproline-rich glycoprote... Lus10025469
[exp]
18.2 0.7683

Lus10020442 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.