Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14110 247 / 3e-84 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007071 [exp] 293 / 3e-102 AT2G14110 308 / 1e-108 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G043900 [exp] 250 / 4e-85 AT2G14110 320 / 1e-112 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.017G043700 [exp] 247 / 3e-84 AT2G14110 311 / 9e-110 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020444 pacid=23139573 polypeptide=Lus10020444 locus=Lus10020444.g ID=Lus10020444.BGIv1.0 annot-version=v1.0 ATGGGAGACGACAAGGTTAAGAGTGAAGCGATGCAGATCATCGGAATGTTTCAGATTCTTCCTAAACTAGTCGTCTTTGATCTCGACTACACTCTCTGGC CTTTCTACTGTGAATGCCGGTCGAAACGGGAAATGCCATCGTTGTATCCTCATGCCAAAGGGATGCTTTATGCTCTAAAGGACAAGGGGATTGATTTAGC AATTGCTTCAAGGTCACCCACCCCTGATATTGCCACCACTTTCTTGACAAACTCAACATCAACTCCATCTTTCCCACCCAGTTGGACACATAAAACAGAA CATTTTCAGAAGATCCATTCAAGAACTGGTGTGCCATTCAACTCAATGCTCTTCTTCGACGATGAGGACAGGAATATTAACACGGTGAGGAGTGACAAGC ATTGCAGCCATGAGCAGGTGTCGAAGAGGGGAGTGACAAGCATTATAGTAGGGAATGGTGTGAGTCTTGGAGCATTGAGGGAAGGGCTGACTAAGTTTTC ACAAAATACAAATACTGTGGAGAAGAACAAACAAAGGTGGACAAAATTTTCCGAAAAGGCAAATTCGTCCAAGAAGAAGAAGCAGGATGATGATTGA
AA sequence Show only first row Show all	>Lus10020444 pacid=23139573 polypeptide=Lus10020444 locus=Lus10020444.g ID=Lus10020444.BGIv1.0 annot-version=v1.0 MGDDKVKSEAMQIIGMFQILPKLVVFDLDYTLWPFYCECRSKREMPSLYPHAKGMLYALKDKGIDLAIASRSPTPDIATTFLTNSTSTPSFPPSWTHKTE HFQKIHSRTGVPFNSMLFFDDEDRNINTVRSDKHCSHEQVSKRGVTSIIVGNGVSLGALREGLTKFSQNTNTVEKNKQRWTKFSEKANSSKKKKQDDD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14110			Haloacid dehalogenase-like hyd...		Lus10020444 [exp]	0	1
AT1G01020		ARV1	Arv1-like protein (.1.2)		Lus10007219 [exp]	6.7	0.7480
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Lus10023776 [exp]	11.0	0.7494
AT1G62680			Pentatricopeptide repeat (PPR)...		Lus10042220 [exp]	16.2	0.7471
AT3G59570			Ypt/Rab-GAP domain of gyp1p su...		Lus10022963 [exp]	18.3	0.7137
AT3G55590			Glucose-1-phosphate adenylyltr...		Lus10014608 [exp]	21.0	0.7278
AT5G11600			unknown protein		Lus10002800 [exp]	25.4	0.6849
AT5G21090			Leucine-rich repeat (LRR) fami...		Lus10001807 [exp]	30.5	0.6982
AT5G11470			bromo-adjacent homology (BAH) ...		Lus10038628 [exp]	31.0	0.7386
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10021037 [exp]	35.0	0.7349
AT5G36930			Disease resistance protein (TI...		Lus10000738 [exp]	41.2	0.7018

Compare expression of checked genes

Lus10020444 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.