Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33620 346 / 6e-107 Cysteine proteinases superfamily protein (.1) AT1G09730 322 / 2e-96 Cysteine proteinases superfamily protein (.1.2) AT1G60220 84 / 2e-16 ULP1D, OTS1 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) AT1G10570 80 / 3e-15 ULP1C, OTS2 UB-LIKE PROTEASE 1C, OVERLY TOLERANT TO SALT 2, Cysteine proteinases superfamily protein (.1.2) AT4G15880 52 / 9e-07 ATESD4, ESD4 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) AT3G48480 46 / 5e-05 Cysteine proteinases superfamily protein (.1) AT3G06910 44 / 0.0006 ULP1A, ELS1, AtULP1a ESD4-LIKE SUMO PROTEASE 1, UB-like protease 1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000917 [exp] 297 / 3e-88 AT1G09730 514 / 1e-169 Cysteine proteinases superfamily protein (.1.2) Lus10007072 [exp] 135 / 2e-37 ND / Lus10030867 [exp] 91 / 1e-18 AT1G60220 250 / 2e-76 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) Lus10030622 [exp] 87 / 2e-17 AT1G60220 253 / 7e-77 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) Lus10035097 [exp] 44 / 0.0002 AT3G48480 146 / 4e-43 Cysteine proteinases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G044000 [exp] 431 / 2e-136 AT1G09730 452 / 4e-143 Cysteine proteinases superfamily protein (.1.2) Potri.007G115400 [exp] 404 / 9e-128 AT1G09730 427 / 3e-135 Cysteine proteinases superfamily protein (.1.2) Potri.005G155600 [exp] 325 / 2e-97 AT1G09730 551 / 0.0 Cysteine proteinases superfamily protein (.1.2) Potri.002G105700 [exp] 319 / 2e-94 AT1G09730 580 / 0.0 Cysteine proteinases superfamily protein (.1.2) Potri.010G040600 [exp] 92 / 5e-19 AT1G60220 410 / 3e-137 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) Potri.015G090800 [exp] 53 / 4e-07 AT3G48480 228 / 8e-74 Cysteine proteinases superfamily protein (.1) Potri.010G180300 [exp] 53 / 4e-07 AT3G48480 278 / 3e-93 Cysteine proteinases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF02902 [flax] [poplar] Peptidase_C48 Ulp1 protease family, C-terminal catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10020445 pacid=23139581 polypeptide=Lus10020445 locus=Lus10020445.g ID=Lus10020445.BGIv1.0 annot-version=v1.0 ATGACTCGTTCCCCGGCGGTTGATGCGAAACCCAGCAGTCGGTTGAGTGTATACGATTTCCACGAGGATGATCAGCCATTGCAGACGGCATACAAGTGGA TTAATCGCCGATCCAACAACCGTAAGCAACCGAAGCGCCAAGCTTCTCCGATTACCAAATATGATTTCCTACAGTACTTTGTGGGAGGCAAAGAGACTGT TAATGTTGATAATAAGGAGCCTCCGCAAAAGAAAGGCAGCTTTGAACCCATCGGTGTTGATGATGAACCAGTCCAAACTTGTTCAGCTGTCGTAGAAGGA TTGGATGGTCTATCAATGGATATCAAAGCTGGCACAATAGGTAATGCCGGAGATCAGGGATATCACCAGGTGCATCATCCACTTGATGCTCCAGAAAAAG ACCATGTGGTGGAGGATACAACACCATTGGTGTTGTCTAGTGATTCAGATGATGAGGACAGCATAAATTCAACAGTTGTTGTCTTCCCTGATTATGTTTG CTACGGAGATGTTTATTGTACAAGCTCTCAGTTGACGTTCTCATGTCACTGTGTTAAAGTTGAGGCTCCAAGTATTAATGGGACCACAGGGATACATAAT GCTGAGTGGGCTGTGAATGATATTGTTAGTTTTCAGTCACAATGGTCTGAGAGGGTTGAGTCTGCTCTTGTTAAACTCCAGTTTAGATCAAAGACTTCTA CCGGATCCGGAGATGGATATGAAACATCAGGCACTGAATCATTAAAATTTGCTGCTTATGATCCACATTGGTCTGAGGGACTGGAAGCAATTAAGTCATT GAATGTTCAATATGCGAATGTGTGGAGTTCTACATCTGTGGAAGAGGATGAAGATGGGTCATTCAAACGCATCCGCAGTTCCAACTCACAAACTTCTTTT TCTAGACTCATGCTTGATGGAAATTATAAAGAAGTTGTCTATCCCATAGATGACCCTGATGCTGTTCTAATTAGCACAAGAGACTTGGCGCTTCTGCAAC CGGAGACATTTATCAATGACACAATTATTGATTTCTATGTTAAGTACTTGATAAATAATAAGATTAGACAAGAAGATCAAAATCGTTTCCACTTTTTCAA TTGTTTTTTCTTCCGGAAGCTTGCTGACCTAGATGAGCACCTGCCTAGTGTTCGTGAAGGCGAGGTTGCTTTCCAAAGTGTCTATAAATGGACAAAGAAA TTGGATCTGTTTAAGAAGGACTACTTATTCATTCCGGTAAACTATAGCCTCCACTGGAGTTTGATTGTAATCTGTCATCCGGATGATGGGAGGGAGAAGC TGGCCAAGATACCTTGCATCTTGCATATGGACTCTATTCAAGGAAGTCATAAAGGCCTCAAAAATCTCTTCCAAAGTTACTTGGCAGAGGAGTGGAAAGT GAGGCATCAGGATATGGTTGATGATGTTTCTTCAAAGTTTTCAGATTTACGTTTTATCCAATTGGAGTTGCCACAACAAAGCAATTCATTTGACTGTGGT CTGTTCTTGCTGCATTATTTGGAGCTCTTTCTGGAGGAAACTCCTGCAAACTTCAATCCCTCCAACCTATCCGATTTCTCGAATTTTCTAAACAAAAATT GGTTTCCACCTGATGAGGCATGTTTGAAACGGAGACACATTCAGAAGTTGTTATCTGAAGTTCTTATGTTGGACAGCATTCAGAGACATCCATGTTCAGA AAATTGTGATGCACTGAATGAAGATATTGTGGTGGAGGTTCTTGGAGAGCAATTAGTTTCCTCTGAAATCCGTCTAGCTAATGCCTTAATATCTGATACT GAACTCAGTACTGGGAATTCACCCGTAGTCACATCTCCTACTGGAGGTTCTGTTGACCGAATTGGAGATATGGAGATTGAAGTCTGTACGTTATCTGAGC CAGGAACTAGTTCAAGGTCATTATACGACGAAATATTAATGTACCAGCGGAAACAAATGCATTATTCAATCACCTTGTCACCAGTTAAGGAAATGGAAGA GTGTGTGTTGGCAACTGAAGGCTGTTATCCAGAAACGCAAGAGAGCGAGTTGGCAACTGAAGATTGTTTCCGAGAAACGCAAGAGTGTGTGATGGCAACT GTAGATTGTTTCCGAGAAACACAAGAGTGTATGATGGCAACTGAAGACTGTTTTCCAGAAACACCAGAGTGTATGTTGGCAACTCAAGACTGTTTGCTGG AAACTGGCAAATCTCCCACTCCCACTATGATCCCTTTCGTTGGAAAGTTTACATCGCCAGGAGCACCTAGAAAACAGAAAGATGTGCATGTAGAACAACT TTCCTACTACAAGTCACCAGATACCGCGATGTATGAGGATGATCTCCAGTCAGCATATGAGCAAAGCCAGCATCATAAGGAAACACGTAAACTTGAATTC TTGTCAGCCTCAAGCCACAAGCCCGAGACTTATGTTATTGAAGACTCCGAAGAAGAAAACTCAGAGTAG
AA sequence Show only first row Show all	>Lus10020445 pacid=23139581 polypeptide=Lus10020445 locus=Lus10020445.g ID=Lus10020445.BGIv1.0 annot-version=v1.0 MTRSPAVDAKPSSRLSVYDFHEDDQPLQTAYKWINRRSNNRKQPKRQASPITKYDFLQYFVGGKETVNVDNKEPPQKKGSFEPIGVDDEPVQTCSAVVEG LDGLSMDIKAGTIGNAGDQGYHQVHHPLDAPEKDHVVEDTTPLVLSSDSDDEDSINSTVVVFPDYVCYGDVYCTSSQLTFSCHCVKVEAPSINGTTGIHN AEWAVNDIVSFQSQWSERVESALVKLQFRSKTSTGSGDGYETSGTESLKFAAYDPHWSEGLEAIKSLNVQYANVWSSTSVEEDEDGSFKRIRSSNSQTSF SRLMLDGNYKEVVYPIDDPDAVLISTRDLALLQPETFINDTIIDFYVKYLINNKIRQEDQNRFHFFNCFFFRKLADLDEHLPSVREGEVAFQSVYKWTKK LDLFKKDYLFIPVNYSLHWSLIVICHPDDGREKLAKIPCILHMDSIQGSHKGLKNLFQSYLAEEWKVRHQDMVDDVSSKFSDLRFIQLELPQQSNSFDCG LFLLHYLELFLEETPANFNPSNLSDFSNFLNKNWFPPDEACLKRRHIQKLLSEVLMLDSIQRHPCSENCDALNEDIVVEVLGEQLVSSEIRLANALISDT ELSTGNSPVVTSPTGGSVDRIGDMEIEVCTLSEPGTSSRSLYDEILMYQRKQMHYSITLSPVKEMEECVLATEGCYPETQESELATEDCFRETQECVMAT VDCFRETQECMMATEDCFPETPECMLATQDCLLETGKSPTPTMIPFVGKFTSPGAPRKQKDVHVEQLSYYKSPDTAMYEDDLQSAYEQSQHHKETRKLEF LSASSHKPETYVIEDSEEENSE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33620			Cysteine proteinases superfami...		Lus10020445 [exp]	0	1
AT2G35510		SRO1	similar to RCD one 1 (.1)		Lus10035390 [exp]	1.0	0.9187
AT2G41790			Insulinase (Peptidase family M...		Lus10042064 [exp]	2.4	0.8873
AT4G02020		SDG10, SWINGER,...	SWINGER, SET DOMAIN-CONTAINING...		Lus10041386 [exp]	2.4	0.8923
AT2G39435			Phosphatidylinositol N-acetygl...		Lus10003295 [exp]	4.0	0.8668
					Lus10030083 [exp]	4.0	0.8546
AT2G26600			Glycosyl hydrolase superfamily...		Lus10006659 [exp]	4.6	0.8558
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10005934 [exp]	4.9	0.8569
AT5G17460			unknown protein		Lus10009117 [exp]	5.5	0.8526
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Lus10034358 [exp]	6.0	0.8380
AT2G41790			Insulinase (Peptidase family M...		Lus10018071 [exp]	7.4	0.8525

Compare expression of checked genes

Lus10020445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.