Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10530 508 / 4e-172 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 466 / 2e-155 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 385 / 3e-124 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 367 / 3e-117 Concanavalin A-like lectin protein kinase family protein (.1) AT5G06740 366 / 3e-117 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 364 / 4e-116 RLK receptor lectin kinase (.1) AT4G02410 357 / 3e-113 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 348 / 3e-110 Concanavalin A-like lectin protein kinase family protein (.1) AT5G03140 349 / 5e-110 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 348 / 5e-110 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007074 [exp] 923 / 0 AT5G10530 426 / 4e-143 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020452 [exp] 782 / 0 AT5G10530 510 / 2e-173 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007077 [exp] 780 / 0 AT5G10530 511 / 4e-171 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004279 [exp] 566 / 0 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004277 [exp] 512 / 9e-174 AT5G10530 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029555 [exp] 508 / 6e-172 AT5G10530 687 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10014648 [exp] 488 / 2e-163 AT5G10530 462 / 4e-154 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007075 [exp] 471 / 2e-161 AT5G10530 397 / 1e-133 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016833 [exp] 471 / 3e-158 AT5G10530 575 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G283866 [exp] 699 / 0 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 699 / 0 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 695 / 0 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G262866 [exp] 681 / 0 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283212 [exp] 674 / 0 AT5G10530 385 / 3e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 673 / 0 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283204 [exp] 649 / 0 AT5G10530 472 / 3e-159 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283200 [exp] 643 / 0 AT5G10530 382 / 8e-125 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G284200 [exp] 619 / 0 AT5G10530 441 / 8e-148 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 589 / 0 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10020446 pacid=23139556 polypeptide=Lus10020446 locus=Lus10020446.g ID=Lus10020446.BGIv1.0 annot-version=v1.0 ATGTTTCCTCTTAGCAATCCCAACCATGGCTGCTCCATCACCAATCCATTCCTCCTCGTCATCACAACCGCCATCCTCCTCCTGGGCTCTCCACCGCCGT CCTCCTCGGCCTTGGAATTCAACTTCACATCTTTCACCGGCGACGGCACAAACATCACCTACGAAGAAGCCTTCCCAGCGGACAACGCAATTCAGCTCAC CCGAAACCTCTTGGGGTCAACCCTCAACTCCAGTATCGGCCGCGCCACTTACAGTTCCCCTTTACCCCTATGGGACCCAATCTCCCGCAACCTAACTGAC TTCCAAACCCATTTCGTCTTCAGCATCTTCTCCCAGTACAAAGACGGCTACGGCGACGGCTTCGCCTTCTTCTTATCCCCCTTCGACTCCAAGCTCCCTC TCGCCAGCCAGGGAGGAACTCTCGGACTCACCGACGGTATTCGCGCCCTCAACGCCACCGTCAACCGTTTCGTCGCCGTCGAATTCGACATCTTCAGCAA CGACTTCGACCCTCTCCCTCTAGGTCGACATCTCGGCATCGACGTGAACTCCTTGAGATCTGTGAAAACCATACCCTGGGGAGCTGACGTCATGGGTGGG AGGAGGAGCGAGGCTTGGATTTCTTACGATTCCGCCACTCGCAACTTGAGCGTGGCGGTTTCTGGGTTCGTTAGGGATTTCCCGATTGTCCAGAGACTCA GCCACATAATCGATTTAAGGGAGTTCTTACCCGAACAGGTCAGGATCGGGTTCTCCGGTTCGACCGGTGACCAGGTCGCGATTCACCGGATTCATTCTTG GGATTTCGCTTCCACGTTGGAAGAAGCAGTGGGTAATCGGACGGGCGAGAGGAGTAGTGATCAGAACAGAGGAAGGAAACAAAACAGAGTGGCTCTGTTT TCTGGGTTGGCTGGTGGGATTGCTGGTGTGTTGGCAATTTTGATTTGTTTGGGCTTTGTTTTCAGGAAAAGGATTGTTGGTTTAATTACAGGTAAAAATG GGGATGATGACCATAGGTTTGAGATGGATGAATCCATGTTTGAGAAAGGAGCTGGACAGCCGAGCAAATTCAGCTTCAAGGAATTAGCAAGAGCTACTAA CAACTTCAACGAACGGGAAAACAAGCTTGGAGAAGGAGGGTTTGGTAAAGTGTACAAGGGTAAAATCGGGAAATTACTCCTCGCTGTCAAGAGGGTGTCG TCGAAGAAATCAGGACAAGGGATGAAGGAATTCGCAGCGGAGGTGAAGATCATCAGCAGATTACGACACAGGAATCTGGTTCAACTCATTGGATGGTGCA GCGAGAAAAAGGAGCTCTTGCTTGTTTACGAATTCCTCCCAAACGGAAGCCTTGATTCCCACCTCTTCCAATCACAAAAACAAGAAAGCTCGATGTTGAA TTGGGAAATTAGGTATAAGATTGCCAAAGGGTTGGCGTCAGGACTGCTCTACTTGCACGAGGAGTGGGAGCAGTGCGTGGTTCACCGAGACATTAAGTCG AGCAACGTTATGCTGGACTCGAATTTCAACGCTAAGCTCGGCGATTTCGGCCTCGCTAGGCTGGTGGATCACGAAAAGGGTTCGCAAACTACGCTTCTGG CTGGGACGATGGGATATCTCGCTCCCGAATGTGTCGTAACGGGGAAGGCGAGTCGAGAGTCTGACGTTTACAGCTTCGGAGTTGTGCTTCTAGAAATCGC TACGGGGAGAAGGCCCGCAGTTAAAGTGAAGGGGCAAGAAGAAGCTGTTGTTGTGCATTTGGTTGAGTGGGCTTGGGACTTCTACGGAGATGGAACGCTG ATGATCGAGGGTCCTGATCCGAAGATGGATAGGGAATATGATTTGGTGGAAATGGAGAGGCTATTGATGGTCGGGTTGTGGTGTGCGCACCCGGATTCGA GCTCGAGACCTTCGGTTAGGCAAGCGCTTCAATTGCTCAACTTTGAAGCTCCGCTGCCGGTACTTCCGTTAAACATGCCGGTGGCAACTTACGGAGGCTC GGACTATATGATGGAGGGGTCATCCGCTCTTTCAACGTGGACGACAATGACTGATGTTGACTTGCAGAGACGTCAGGTTTCTTGTGACTTCAACGCGTCG GATGGGGTAGCTCCTTCACCACTTGGAAAGCTCAGCAGTGATGCAGTCACTTTCTAG
AA sequence Show only first row Show all	>Lus10020446 pacid=23139556 polypeptide=Lus10020446 locus=Lus10020446.g ID=Lus10020446.BGIv1.0 annot-version=v1.0 MFPLSNPNHGCSITNPFLLVITTAILLLGSPPPSSSALEFNFTSFTGDGTNITYEEAFPADNAIQLTRNLLGSTLNSSIGRATYSSPLPLWDPISRNLTD FQTHFVFSIFSQYKDGYGDGFAFFLSPFDSKLPLASQGGTLGLTDGIRALNATVNRFVAVEFDIFSNDFDPLPLGRHLGIDVNSLRSVKTIPWGADVMGG RRSEAWISYDSATRNLSVAVSGFVRDFPIVQRLSHIIDLREFLPEQVRIGFSGSTGDQVAIHRIHSWDFASTLEEAVGNRTGERSSDQNRGRKQNRVALF SGLAGGIAGVLAILICLGFVFRKRIVGLITGKNGDDDHRFEMDESMFEKGAGQPSKFSFKELARATNNFNERENKLGEGGFGKVYKGKIGKLLLAVKRVS SKKSGQGMKEFAAEVKIISRLRHRNLVQLIGWCSEKKELLLVYEFLPNGSLDSHLFQSQKQESSMLNWEIRYKIAKGLASGLLYLHEEWEQCVVHRDIKS SNVMLDSNFNAKLGDFGLARLVDHEKGSQTTLLAGTMGYLAPECVVTGKASRESDVYSFGVVLLEIATGRRPAVKVKGQEEAVVVHLVEWAWDFYGDGTL MIEGPDPKMDREYDLVEMERLLMVGLWCAHPDSSSRPSVRQALQLLNFEAPLPVLPLNMPVATYGGSDYMMEGSSALSTWTTMTDVDLQRRQVSCDFNAS DGVAPSPLGKLSSDAVTF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10530			Concanavalin A-like lectin pro...		Lus10020446 [exp]	0	1
AT5G59030		COPT1	copper transporter 1 (.1)		Lus10016464 [exp]	1.4	0.8587
AT4G32300		SD2-5	S-domain-2 5 (.1)		Lus10043391 [exp]	2.0	0.8537
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10023034 [exp]	4.5	0.8054
AT1G34420			leucine-rich repeat transmembr...		Lus10009429 [exp]	6.0	0.8047
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10041905 [exp]	10.7	0.8240
AT5G45840			Leucine-rich repeat protein ki...		Lus10007516 [exp]	11.0	0.7672
AT2G36980			Tetratricopeptide repeat (TPR)...		Lus10012796 [exp]	11.7	0.8196
AT1G10350			DNAJ heat shock family protein...		Lus10013280 [exp]	13.0	0.8293
AT5G11000			Plant protein of unknown funct...		Lus10017128 [exp]	14.1	0.8094
AT2G28500	AS2	LBD11	LOB domain-containing protein ...		Lus10011645 [exp]	15.2	0.7672

Compare expression of checked genes

Lus10020446 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.