Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10530 182 / 5e-55 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 177 / 9e-53 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 160 / 9e-47 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53380 159 / 6e-46 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 156 / 3e-45 Concanavalin A-like lectin protein kinase family protein (.1) AT5G06740 152 / 1e-43 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 150 / 5e-43 Concanavalin A-like lectin protein kinase family protein (.1) AT5G03140 150 / 6e-43 Concanavalin A-like lectin protein kinase family protein (.1) AT3G08870 148 / 4e-42 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 148 / 4e-42 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007075 [exp] 258 / 2e-86 AT5G10530 397 / 1e-133 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020446 [exp] 220 / 1e-68 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007074 [exp] 213 / 2e-67 AT5G10530 426 / 4e-143 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020452 [exp] 213 / 3e-66 AT5G10530 510 / 2e-173 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007077 [exp] 215 / 6e-66 AT5G10530 511 / 4e-171 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004279 [exp] 203 / 2e-62 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007079 [exp] 178 / 2e-56 AT5G10530 335 / 3e-111 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016836 [exp] 189 / 3e-56 AT3G16810 761 / 0.0 pumilio 24 (.1) Lus10029553 [exp] 186 / 3e-56 AT5G10530 591 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G283400 [exp] 204 / 1e-62 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283204 [exp] 202 / 2e-62 AT5G10530 472 / 3e-159 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283866 [exp] 202 / 5e-62 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 202 / 5e-62 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283212 [exp] 200 / 4e-61 AT5G10530 385 / 3e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283200 [exp] 197 / 1e-60 AT5G10530 382 / 8e-125 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G284200 [exp] 196 / 1e-60 AT5G10530 441 / 8e-148 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 198 / 2e-60 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G262866 [exp] 197 / 2e-60 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 190 / 1e-57 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10020447 pacid=23139560 polypeptide=Lus10020447 locus=Lus10020447.g ID=Lus10020447.BGIv1.0 annot-version=v1.0 ATGTACTTGGTTCAACTGTTTGGATGGTGTTATGACAAAATGGAGCTGCTCCTTGTTTACAAGTTTCTACCAAACGGCAGCCTTGATATGCATCTGTTTC GGAAGAGCAACAATTCGTTGTTGAGATGGGAAACGAGGTATAAGATCGCGAAAGGTAGGTTTAGCATCGGCATTGCTGTATTTGCACGAAGAGTGGAGCA ATGTGTGGTTCATCGATACATCAAGTCGAGCAACGTTATGCTAGATTCGAATTTCAACGTCAAATTGGGCAATTTCGGGCTGGCGAGGCTGGTGGATCAA GATAAGGGCTCCCAAACCACTCGGATGGCTGGGACAATGGGTTATTTGGCTCCCGAGTACGCCACAACAGGGAAGGCGAATCTGGAGTCCGATATTTACA GCTTTGGAGTTGTGCTTTTGGAAATTGCCACGGGTAGAAGGCCGGCAGTTGTGGAAGAGTAG
AA sequence Show only first row Show all	>Lus10020447 pacid=23139560 polypeptide=Lus10020447 locus=Lus10020447.g ID=Lus10020447.BGIv1.0 annot-version=v1.0 MYLVQLFGWCYDKMELLLVYKFLPNGSLDMHLFRKSNNSLLRWETRYKIAKGRFSIGIAVFARRVEQCVVHRYIKSSNVMLDSNFNVKLGNFGLARLVDQ DKGSQTTRMAGTMGYLAPEYATTGKANLESDIYSFGVVLLEIATGRRPAVVEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10530			Concanavalin A-like lectin pro...		Lus10020447 [exp]	0	1
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10004841 [exp]	1.0	0.9620
AT4G05440		EDA35	embryo sac development arrest ...		Lus10000812 [exp]	1.4	0.9366
AT5G45190			Cyclin family protein (.1.2)		Lus10018272 [exp]	2.8	0.9195
AT1G14830		DRP1C, ADL5, AD...	DYNAMIN RELATED PROTEIN 1C, AR...		Lus10043352 [exp]	5.7	0.9302
AT1G04480			Ribosomal protein L14p/L23e fa...		Lus10008065 [exp]	5.8	0.8895
					Lus10027893 [exp]	7.0	0.9073
AT5G16020		GEX3	gamete-expressed 3 (.1)		Lus10034090 [exp]	7.3	0.8844
AT2G16280		KCS9	3-ketoacyl-CoA synthase 9 (.1)		Lus10040578 [exp]	9.2	0.8568
AT1G55570		SKS12	SKU5 similar 12 (.1)		Lus10021864 [exp]	10.4	0.9049
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Lus10016941 [exp]	10.6	0.8984

Compare expression of checked genes

Lus10020447 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.