Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023136 [exp] 79 / 7e-18 ND / Lus10043133 [exp] 73 / 3e-15 AT1G04760 290 / 2e-98 vesicle-associated membrane protein 726 (.1) Lus10010393 [exp] 54 / 1e-08 ND / Lus10009741 [exp] 53 / 2e-08 ND / Lus10042625 [exp] 46 / 9e-07 ND / Lus10002224 [exp] 47 / 3e-06 ND / Lus10032843 [exp] 44 / 5e-06 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020450 pacid=23139563 polypeptide=Lus10020450 locus=Lus10020450.g ID=Lus10020450.BGIv1.0 annot-version=v1.0 ATGGGCGTGGAAAAACAGGAGGAGGCCAATCCCGAACCAGTCGTTTTCGAAAAGCGGCAGGTGGAAGTTACTGGCCCCGTTATAGGAACAGGAAAAGAAG CTATTTTGGAATCAGTGGGTGAAGCGATGAAGGAAACTCCGACTGGTAAACAGGTTGTGGTGGACTTGGTGGGTGATTCGGAGAAGCCAACTCCGGTTGC ATACGACCGACAAAAGACTAGCATTTACGTCCTCTCAAAGCGACTTCGGCAGGAATTGACACTGGTGTGTTGGTTGATATCAACAGCTTCATTATTTGTG ACTTCTCGGAAAAGGCATGAAAGTCATAAGTTTGAGTTAGAGACCGTCCAATATCCGAACCAGGTGCATATCGTACTAATGGATGCATTCTGCCACCAGT TCAACAAGGAGGATATGCTGGAGAACAACAACATAATAACAAGACTGTGTGTGTTTGTTTCACTTAGTACTGTTGCTAGGACAAAAGTTGAAAATGAGAT TGAGTTTTCACTCACTCAATCAAGATTCCCTCATGCTTTCAAGGACTTCTTGAATGATAAATACCTCTAG
AA sequence Show only first row Show all	>Lus10020450 pacid=23139563 polypeptide=Lus10020450 locus=Lus10020450.g ID=Lus10020450.BGIv1.0 annot-version=v1.0 MGVEKQEEANPEPVVFEKRQVEVTGPVIGTGKEAILESVGEAMKETPTGKQVVVDLVGDSEKPTPVAYDRQKTSIYVLSKRLRQELTLVCWLISTASLFV TSRKRHESHKFELETVQYPNQVHIVLMDAFCHQFNKEDMLENNNIITRLCVFVSLSTVARTKVENEIEFSLTQSRFPHAFKDFLNDKYL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10020450 [exp]	0	1
					Lus10020449 [exp]	1.0	0.8807
AT5G53080			Tetratricopeptide repeat (TPR)...		Lus10005905 [exp]	10.2	0.7364
AT1G69630			F-box/RNI-like superfamily pro...		Lus10029588 [exp]	10.6	0.7135
AT1G56000			FAD/NAD(P)-binding oxidoreduct...		Lus10013734 [exp]	19.0	0.7306
AT4G32790			Exostosin family protein (.1)		Lus10043238 [exp]	22.0	0.7271
AT4G25180			RNA polymerase III RPC4 (.1)		Lus10000362 [exp]	25.7	0.7279
					Lus10042808 [exp]	31.5	0.6956
AT4G21510			F-box family protein (.1)		Lus10022370 [exp]	33.8	0.7201
AT1G13330		AHP2	Arabidopsis Hop2 homolog (.1)		Lus10035033 [exp]	40.1	0.6998
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10025388 [exp]	42.6	0.6096

Compare expression of checked genes

Lus10020450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.