Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10530 470 / 1e-157 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 410 / 4e-134 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 369 / 5e-118 Concanavalin A-like lectin protein kinase family protein (.1) AT5G06740 345 / 3e-109 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 338 / 1e-106 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 329 / 4e-103 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 322 / 3e-100 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 318 / 1e-98 RLK receptor lectin kinase (.1) AT4G29050 306 / 2e-94 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 293 / 2e-89 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007077 [exp] 1188 / 0 AT5G10530 511 / 4e-171 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020446 [exp] 748 / 0 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004279 [exp] 530 / 2e-180 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007074 [exp] 522 / 8e-180 AT5G10530 426 / 4e-143 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004277 [exp] 476 / 9e-160 AT5G10530 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020456 [exp] 474 / 2e-158 AT5G10530 519 / 1e-176 Concanavalin A-like lectin protein kinase family protein (.1) Lus10014648 [exp] 473 / 8e-158 AT5G10530 462 / 4e-154 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029555 [exp] 468 / 2e-156 AT5G10530 687 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033783 [exp] 468 / 7e-156 AT5G10530 468 / 2e-156 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G283866 [exp] 684 / 0 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 684 / 0 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G262866 [exp] 683 / 0 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283212 [exp] 674 / 0 AT5G10530 385 / 3e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 664 / 0 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283200 [exp] 653 / 0 AT5G10530 382 / 8e-125 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 649 / 0 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283204 [exp] 630 / 0 AT5G10530 472 / 3e-159 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G284200 [exp] 593 / 0 AT5G10530 441 / 8e-148 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 561 / 0 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10020452 pacid=23139521 polypeptide=Lus10020452 locus=Lus10020452.g ID=Lus10020452.BGIv1.0 annot-version=v1.0 ATGGCGACCAAGCTCTCCGTTCTTCTTCTCATCATCATCACTTCCATCATCCCACAACCATCAGCCGGACTAACATTCAACTTCACAACCTTCACAAACG ACAACCAAAACATCACTTACGAAGAAGCATTCCCAGCAGACAACGCAATTCAGCTCACCAAGAACCTCCTTGGCTCCGATCTCAAATTCAGCTTCGGCCG CGCCACTTACCGATCCCCTTTACCCCTCTGGGACCCCGTCTCCCGAAACCTCACCGATTTCCATACCCATTTCACCTTCAGCATCTTCTCTCAGTTCCAA ACTGGTTACGGCGATGGCCTCGCCTTCTTCCTCGCACCCAAGGGCTCCAAGCTCCCAACTAACCTGACAGAAGGAGGCTCCATGGGCCTAACCAGAGACC TCCAGCAGTTAAACACCACCGAGAATCAATTCGTGGCTGTGGAATTCGACATCTTCAAGAATCCGTGGGATCCTGACGGGAAACACGTAGGGATAGACTT AGATTCCATGGCTTCTGTCAGGAATATAACCTGGGGTGGTGACATAATGAACGGGAGGAAGAGCGATGCATGGATCCAGTACGATTCAAGTGCGTTTAAC TTGAGCGTTGTTGTGACCGGGTTCGTGGGTGATGTGATGTTGAATCAGAGTTTGAGCCAGATTGTCGACCTGAGGGATTACCTTCCTGAGGAGGTCATTT TTGGGTTCTCGGGATCTACGGGAAATCAGAGCGCCATTCACAAGGTTCACACATGGGAATTCAAGTCAACTCTTGAATTTCCAGGTGGGAAATACACGGG AAGCAGGAAAAGCAGAGCTCCCCTGTTTATCGGTTCCACTGGTTTGGCTGTTGGGTTGGTGGTGTTGGTTTCTTTTCTTATCCTTTACCGGAAAAAGATA TTTGGCTGCAGAAATGCGAAGTATGGCGGTCATGGTTCTGGTCGTGGTCGTGGTGATGTTCATGATGACGAGCAACACAAATTGGATCGACAAATAATGG ACGAAGTTTTGGCGGATGGAGCGGAAGGAGGACTAAGGAAGTTCACATTCCAAGAATTGGCTCGAGCTACCAACAATTTCGATGACGAAGGTAACAAGCT TGGAGAAGGAGGGTTTGGAGGGGTCTACAGAGGGTATCTCAAGGACAAGAAGGACGAAGTTGCTGTGAAGAGGGTGTCGAAGAAGTCGAGGCAAGGGATT CGAGAATTCGCTGCTGAGGTTAAGATCATCAGCCGGTTGAGGCACCGGAATTTGGTCAGGCTAATCGGATGGTGTCACGAGAAGGATGAGTTGCTCCTAG TGTACGAGTTCCTAACTAACGGCAGCCTCGATTTCCACCTCTTCAAGCAAAAAGATGTAAACTTGTTATTGAATTGGGAAACTAGGTACAAAATTGCTAA AGGGTTGGCATCCGGGTTGCTGTACTTGCACGAGGAGTGGGAGCAATGTGTGGTACATAGAGACATCAAGTCGAGCAACGTCATGTTGGATTCGAATTTC GGTGCCAAGTTAGGCGATTTTGGACTGGCCAGGTTAGTCGATCACGACAAAGGCTCACAAACTACAATGCTGGCTGGTACGATCGGATATGTGGCTCCCG AATCTGCCATGACGGGGAAAGCAAATAAGGAGACAGATATCTATAGTTTCGGAGTCGTGGCATTGGAGATTGCGACCGGGAGAAAGCCGTCCGTTATGGT TAAACTTGATGGGAATCAATGTTTTGTCCATTTGGTTAAGTGGGTGTGGGACCTATTCAGTGCAGGCACCATGCTAGAAGAAGGTCCTGAGTTCGGACTA AGCGGAAAATTTGCGGAAGAGGAAATGGAGAGATTGATGATAATCGGGTTGTGCTGCTGCCACCCGGATCCGAAGTTGAGGCCTTCGATAAGGCAAGCGC TTCAAGTTTTGAACTTCGAGGCGCCATTGCCGGTTCTCCCGATGAATATGCCGGTGGCTACTTTTATTTCGGCACCGTTTTCGTCAATGGATGCTACTAC TTCTACAACTTCGTCGTCGGGAGTGGGTATTACTCGGTCAATTGACATAACCAATACAATGGCGAGGTGA
AA sequence Show only first row Show all	>Lus10020452 pacid=23139521 polypeptide=Lus10020452 locus=Lus10020452.g ID=Lus10020452.BGIv1.0 annot-version=v1.0 MATKLSVLLLIIITSIIPQPSAGLTFNFTTFTNDNQNITYEEAFPADNAIQLTKNLLGSDLKFSFGRATYRSPLPLWDPVSRNLTDFHTHFTFSIFSQFQ TGYGDGLAFFLAPKGSKLPTNLTEGGSMGLTRDLQQLNTTENQFVAVEFDIFKNPWDPDGKHVGIDLDSMASVRNITWGGDIMNGRKSDAWIQYDSSAFN LSVVVTGFVGDVMLNQSLSQIVDLRDYLPEEVIFGFSGSTGNQSAIHKVHTWEFKSTLEFPGGKYTGSRKSRAPLFIGSTGLAVGLVVLVSFLILYRKKI FGCRNAKYGGHGSGRGRGDVHDDEQHKLDRQIMDEVLADGAEGGLRKFTFQELARATNNFDDEGNKLGEGGFGGVYRGYLKDKKDEVAVKRVSKKSRQGI REFAAEVKIISRLRHRNLVRLIGWCHEKDELLLVYEFLTNGSLDFHLFKQKDVNLLLNWETRYKIAKGLASGLLYLHEEWEQCVVHRDIKSSNVMLDSNF GAKLGDFGLARLVDHDKGSQTTMLAGTIGYVAPESAMTGKANKETDIYSFGVVALEIATGRKPSVMVKLDGNQCFVHLVKWVWDLFSAGTMLEEGPEFGL SGKFAEEEMERLMIIGLCCCHPDPKLRPSIRQALQVLNFEAPLPVLPMNMPVATFISAPFSSMDATTSTTSSSGVGITRSIDITNTMAR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10530			Concanavalin A-like lectin pro...		Lus10020452 [exp]	0	1
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10033932 [exp]	9.2	0.8229
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Lus10010758 [exp]	21.8	0.7807
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10035865 [exp]	27.3	0.7494
AT1G12150			Plant protein of unknown funct...		Lus10039107 [exp]	27.4	0.7412
AT1G11340			S-locus lectin protein kinase ...		Lus10030768 [exp]	36.5	0.7394
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10003530 [exp]	44.5	0.7433
AT4G34770			SAUR-like auxin-responsive pro...		Lus10007564 [exp]	48.1	0.7406
AT5G06500	MADS	AGL96	AGAMOUS-like 96 (.1)		Lus10012154 [exp]	49.8	0.7356
AT5G38195			Bifunctional inhibitor/lipid-t...		Lus10017615 [exp]	52.2	0.7338
AT2G33205			Serinc-domain containing serin...		Lus10011768 [exp]	56.5	0.6609

Compare expression of checked genes

Lus10020452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.