Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01320 116 / 1e-27 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004009 [exp] 633 / 0 AT1G01320 2014 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10030259 [exp] 351 / 7e-109 AT1G01320 1731 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10030258 [exp] 287 / 2e-96 AT1G01320 169 / 1e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G098600 [exp] 210 / 2e-59 AT1G01320 2036 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.002G170900 [exp] 174 / 7e-47 AT1G01320 2033 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020453 pacid=23139548 polypeptide=Lus10020453 locus=Lus10020453.g ID=Lus10020453.BGIv1.0 annot-version=v1.0 ATGACGGTGGATAATCTTCTGTTGCATGCTACGGATGCTGAAGTGGACTATGCTTCGGCCAAGAACACCCTTCAGAGTACTAAGCATTACATTGTAAAGA AACGACCTATCTCTCAGGGAACTTATGCAGACCAACAAGGCGCACTTCCTTCTCAGCCAGCCAAGAATGGGCGGAGGATCACAAAAACTGTAGCATATCG AGTCAAATCTGTCCCTTCGCCCGATAAAAATGCTGCTGCCTCCGAGACTTATGAACAAGTGGGCAAAGTTTTCTCCTCTGCAACAGAACCTGTTACAATT TCTGCTCCAAGTGAGGGTAACTCGTTAAAGAATCAAATAGTTAGCTTGGGAAAGTCCCCATCATACAAGGTCGCATTAGCGCCACCTGGCACTATCTGGT CACCTGTTTCGGATAATGGAGATAAACCAGTTACTGGTGTTCATAACCATGAAGAGACACATGAAGCTAGGGAAATTGCTATTCCAGATGTATTCGAGAA GAACACAGAAAGTGCATCGATCGACTTGGTAGAAGATAGTTTGACGACACCCTCCAACGTGCAAGAATCCAAGTCTACTCTTTTAGATCATGAATATGTT GGGACCCAGGCCCAATACCCAGAACGTCAGCCCGGTCAACCCATTGGATGGAAGCTATCTGCCTCTGCTGCTCCATTTAACCCTTCACCATCTGTTATCC GACCTGTGCCACTCCCTCTGAACATTCCTCTTCCTTCTGGTCCCGGTCCGGTTCAAGCCGTTGCACCCTGGCCGGTAACCCTTCACCCGGTGACTGGAAC CATCATATCGACTGTTAGTCCACTCCCCTCTCCGCACCATCCGTTTCCATCACCTCCTCATACCCCAAACATGATGCAACCACTATCCTTCATGTACCCA CCTTACAGTCAAGCTCAGGGAATCCCACCGAGTACCTATCCCATCACCAACACTGCATTCCATCCAAGTCATTACTCTTGGCAGTGCAATGTGAGCCGGA ACGTGCAGGAGTTTGTTCCTACCACGATGTGGCCCGGTTGTCACATGGTGGAGTTCCCTCCTGCCCCGTCACCTGTTATATATCCCGTTTCCGATCCTGT ACTGGACCATAATGAGATATTGGAGAGTCCTGACTCGCTCCTGTCGGCCGATATTGTCAATGTAACTGATTCTGACAAGGGCGCGAGTCTTCCGGTGGAA GAAAATGGTCGTTTGAACTTGTCCGGTGTCGACACTTCTACTAGCTACGGCATGAAAGAGAACTCGGCTGATGGGGAGAGAACTTTCAGCATTTTGATAA GGGAAAGGAGAAACAGAAAGTAA
AA sequence Show only first row Show all	>Lus10020453 pacid=23139548 polypeptide=Lus10020453 locus=Lus10020453.g ID=Lus10020453.BGIv1.0 annot-version=v1.0 MTVDNLLLHATDAEVDYASAKNTLQSTKHYIVKKRPISQGTYADQQGALPSQPAKNGRRITKTVAYRVKSVPSPDKNAAASETYEQVGKVFSSATEPVTI SAPSEGNSLKNQIVSLGKSPSYKVALAPPGTIWSPVSDNGDKPVTGVHNHEETHEAREIAIPDVFEKNTESASIDLVEDSLTTPSNVQESKSTLLDHEYV GTQAQYPERQPGQPIGWKLSASAAPFNPSPSVIRPVPLPLNIPLPSGPGPVQAVAPWPVTLHPVTGTIISTVSPLPSPHHPFPSPPHTPNMMQPLSFMYP PYSQAQGIPPSTYPITNTAFHPSHYSWQCNVSRNVQEFVPTTMWPGCHMVEFPPAPSPVIYPVSDPVLDHNEILESPDSLLSADIVNVTDSDKGASLPVE ENGRLNLSGVDTSTSYGMKENSADGERTFSILIRERRNRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10020453 [exp]	0	1
AT5G19120			Eukaryotic aspartyl protease f...		Lus10041004 [exp]	3.3	0.7217
AT2G27590			S-adenosyl-L-methionine-depend...		Lus10020593 [exp]	3.9	0.7728
AT5G02250		ATMTRNASEII, RN...	ribonucleotide reductase 1, EM...		Lus10010842 [exp]	4.7	0.7970
AT3G54980			Pentatricopeptide repeat (PPR)...		Lus10043367 [exp]	7.6	0.6574
					Lus10027391 [exp]	16.0	0.7567
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10000912 [exp]	17.0	0.7756
AT1G54140		TAF9, TAFII21	TBP-ASSOCIATED FACTOR 9, TATA ...		Lus10022103 [exp]	18.0	0.7513
AT3G22470			Pentatricopeptide repeat (PPR)...		Lus10003426 [exp]	25.1	0.7112
AT4G37460		SRFR1	SUPPRESSOR OF RPS4-RLD 1, Tetr...		Lus10014863 [exp]	27.4	0.7295
AT3G50210			2-oxoglutarate (2OG) and Fe(II...		Lus10041597 [exp]	27.5	0.7283

Compare expression of checked genes

Lus10020453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.