Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00980 44 / 2e-05 zinc knuckle (CCHC-type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020454 pacid=23139592 polypeptide=Lus10020454 locus=Lus10020454.g ID=Lus10020454.BGIv1.0 annot-version=v1.0 ATGGCGCTGATGATGCTGGACAAAAGAAGTACGTTGTTGGAAACTGGCAAGATGGATGACAAAAGGCCAATCATGGAACAGGTCCACATCTATGAAAATC GAACTGCTAATGTTCTTGCCGAGGGGATGAAGATGTGTGAAGTTCTGCAAGCAAATGTTCTCATTGAAAGCATGCCAGAAACTTGGTCAGACTACCGGAA TCGTCTGAAGGACAAAGATATCAAGCCCTCTCAAACATTTGTTAATGCTAACTTGGTTGAATGTTCTGTTATAAATGGTGACAGGTCAAAATCATACAAA AGGAAACCAACTCCTCAGAACAAACATCCTCAAAGCAACAAAAGGATTGGCTCACATCTCAGAAACAACAACGGACGCTTCGTGTGTGGAAAAGAAGGCC ACATGGTTCTTAGAGGAAAAGAATTGGGCAAATCTCGACTCGATTTGGTTCGTCAACCGCTCTACTTTTGTATCACTTAG
AA sequence Show only first row Show all	>Lus10020454 pacid=23139592 polypeptide=Lus10020454 locus=Lus10020454.g ID=Lus10020454.BGIv1.0 annot-version=v1.0 MALMMLDKRSTLLETGKMDDKRPIMEQVHIYENRTANVLAEGMKMCEVLQANVLIESMPETWSDYRNRLKDKDIKPSQTFVNANLVECSVINGDRSKSYK RKPTPQNKHPQSNKRIGSHLRNNNGRFVCGKEGHMVLRGKELGKSRLDLVRQPLYFCIT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00980			zinc knuckle (CCHC-type) famil...		Lus10020454 [exp]	0	1
AT5G01150			Protein of unknown function (D...		Lus10002340 [exp]	4.4	0.7940
AT1G65450			HXXXD-type acyl-transferase fa...		Lus10029920 [exp]	5.0	0.8631
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10034348 [exp]	7.1	0.8631
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011999 [exp]	8.1	0.8598
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10031852 [exp]	10.2	0.8503
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10007909 [exp]	10.7	0.8491
					Lus10034069 [exp]	11.5	0.8467
					Lus10011637 [exp]	13.5	0.8412
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10008682 [exp]	15.6	0.8331
AT1G52190			Major facilitator superfamily ...		Lus10008539 [exp]	15.8	0.8307

Compare expression of checked genes

Lus10020454 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.