Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007080 [exp] 314 / 5e-107 ND / Lus10007078 [exp] 247 / 5e-81 ND / Lus10007077 [exp] 203 / 1e-57 AT5G10530 511 / 4e-171 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007081 [exp] 138 / 3e-36 AT5G55150 45 / 6e-05 Protein of unknown function (DUF295) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G078900 [exp] 147 / 6e-41 AT5G24040 52 / 1e-07 Protein of unknown function (DUF295) (.1), Protein of unknown function (DUF295) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03478 [flax] [poplar] DUF295 Protein of unknown function (DUF295)
Representative CDS sequence Show only first row Show all	>Lus10020455 pacid=23139602 polypeptide=Lus10020455 locus=Lus10020455.g ID=Lus10020455.BGIv1.0 annot-version=v1.0 ATGTCACCAATCGAGGCTATTTCGAGGACCCGACACAGTAGCCACCGCAAATGCAAATCGAACAAACCAGCCGCGGGAGCTCCAAATCAATCATTATCGG CAGCAGTAGCAGCATCATCGACCGGTTCAGTGCAGTGGCTAGACCTTCCAAGACAGCTTGTGAATCTAATGGCAGCAGCGAAGCCAACAATGTTCAAAGA CGTCTCTTCCCATTGCGTCACAAAGTCGTGGCAGCGGCCTTCCCCTCCCAAATTCAAATGCTGCAAATCAAATCTGGTGTCCACTCTGCCGCAGCTCCAG CTAATAACTCACCATCATGATCAAACCTCCTCCACATTTCCCGGACAATTTATCTCCACCTACCCGATCCCGACAATCCAAGGCTACACCCGCTGGATAG GTCATAAATATAACCGCCCCCAGAACCAAACCACACGACGACTGATCGGGTTCTCCAAGGGAATGATGTTCCGGAGTACTTACATGTCTGAATCACCTAC TCGATACGACCTATTCAATGCTGAAGATTATCCAGGCAGTTGGGGAATCCTTAATCCATGGGAAGCGGCCGATCAACCATTTTATCGCCCTCAATGCTAC GCATGCCTTCAGCCTCGTGTATTGATGGTTCTCACAGGCTTACCCGTTCCTGCTTTTGCCTACAGCAGGATAGGGATTCCGTGGGACCATTCCTGGAAGA AGCACGATTCCGTTATGGTAGACCCCAATGGTACATCGAATGGAGGAGGAGGAGGAGGACGGTATATGATCCTCTGTAATGGCGTTTGGCTGAGGCGGAA GTTGTACGCTCTGAGTCTGCAGGGGACTCTAGCCGTTATCGAGGAAGACAACAAGGATGGATTCAGGATTGGTGCTGTGTGTAAACAGGGTAGAGCTGTT CCTTGTGGTCCGTTTAAGCAGTTCAGGGAGTGTTTGGTGGAATCTGGAGGGGAAGTTCTTCTGGTTTTCTTGGTTTTTAAGAAATGTATGGAGAGGGTGG ATGAAGTTGAAGTTTATAGCCTTGTTGTTGGGAAGCTGGAGTGGGTGCGGAGGCAGAGCTTGGGAGGAGGAGATAGAGCTTTGTTCTTTGGAACCAACTG TTGTGTATCTGTTGGTGCTCCATGGGAAGTGGGAGTAGCATGCAGGAGGAATTGTGTCTACTTCAAGGCCAATTATTTCGACGAATGGTCGGAATATGAC TTGGAAACCAGAACTATCCTTCCCTTTCCTAGCCTTGATTCTGGAGTTGATTGTTCTTATTAG
AA sequence Show only first row Show all	>Lus10020455 pacid=23139602 polypeptide=Lus10020455 locus=Lus10020455.g ID=Lus10020455.BGIv1.0 annot-version=v1.0 MSPIEAISRTRHSSHRKCKSNKPAAGAPNQSLSAAVAASSTGSVQWLDLPRQLVNLMAAAKPTMFKDVSSHCVTKSWQRPSPPKFKCCKSNLVSTLPQLQ LITHHHDQTSSTFPGQFISTYPIPTIQGYTRWIGHKYNRPQNQTTRRLIGFSKGMMFRSTYMSESPTRYDLFNAEDYPGSWGILNPWEAADQPFYRPQCY ACLQPRVLMVLTGLPVPAFAYSRIGIPWDHSWKKHDSVMVDPNGTSNGGGGGGRYMILCNGVWLRRKLYALSLQGTLAVIEEDNKDGFRIGAVCKQGRAV PCGPFKQFRECLVESGGEVLLVFLVFKKCMERVDEVEVYSLVVGKLEWVRRQSLGGGDRALFFGTNCCVSVGAPWEVGVACRRNCVYFKANYFDEWSEYD LETRTILPFPSLDSGVDCSY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10020455 [exp]	0	1
AT1G68765		IDA	INFLORESCENCE DEFICIENT IN ABS...		Lus10034385 [exp]	1.0	0.9884
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10027586 [exp]	1.4	0.9836
AT3G44190			FAD/NAD(P)-binding oxidoreduct...		Lus10013339 [exp]	3.5	0.9680
AT5G44390			FAD-binding Berberine family p...		Lus10038442 [exp]	4.9	0.9734
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10005262 [exp]	4.9	0.9816
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10035479 [exp]	6.3	0.9714
AT3G09220		LAC7	laccase 7 (.1)		Lus10027747 [exp]	6.6	0.9774
					Lus10027919 [exp]	7.7	0.9762
AT2G33420			Protein of unknown function (D...		Lus10011785 [exp]	8.1	0.9621
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10041658 [exp]	8.4	0.9738

Compare expression of checked genes

Lus10020455 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.