Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10530 452 / 2e-150 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 394 / 7e-128 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 356 / 4e-113 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 331 / 8e-104 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 329 / 8e-103 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 320 / 2e-99 RLK receptor lectin kinase (.1) AT3G53810 310 / 8e-96 Concanavalin A-like lectin protein kinase family protein (.1) AT5G06740 307 / 1e-94 Concanavalin A-like lectin protein kinase family protein (.1) AT3G59700 303 / 5e-93 LECRK1, ATHLECRK LECTIN-RECEPTOR KINASE 1, lectin-receptor kinase (.1) AT4G29050 301 / 2e-92 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007079 [exp] 563 / 0 AT5G10530 335 / 3e-111 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020446 [exp] 475 / 2e-158 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004277 [exp] 460 / 1e-153 AT5G10530 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029555 [exp] 446 / 1e-147 AT5G10530 687 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020452 [exp] 443 / 2e-146 AT5G10530 510 / 2e-173 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007077 [exp] 444 / 1e-144 AT5G10530 511 / 4e-171 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016833 [exp] 431 / 7e-143 AT5G10530 575 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029553 [exp] 415 / 7e-136 AT5G10530 591 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016836 [exp] 421 / 2e-131 AT3G16810 761 / 0.0 pumilio 24 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G004200 [exp] 530 / 4e-180 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.003G094700 [exp] 494 / 1e-166 AT5G10530 764 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004500 [exp] 489 / 5e-165 AT5G10530 725 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004300 [exp] 476 / 7e-160 AT5G10530 743 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004400 [exp] 473 / 8e-159 AT5G10530 738 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G262866 [exp] 392 / 9e-127 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283200 [exp] 388 / 4e-126 AT5G10530 382 / 8e-125 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 390 / 6e-126 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283866 [exp] 390 / 6e-126 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 388 / 5e-125 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10020456 pacid=23139588 polypeptide=Lus10020456 locus=Lus10020456.g ID=Lus10020456.BGIv1.0 annot-version=v1.0 ATGGATCATCACCATCCCCTGTTTCTCCTCTTCACCCTGCTCTGCCTCTCAACGGCCGCCGCCACCAACTTCACCTACTCTTCCTTCTCCGCCAACGACC CAAACATCACCGTCCTCAACGCCACCACTAAAGGACCAAACTTAGGCCACGATTCCATCCTCCTCACCAGCTCCCAGATCTTCAACACCATCTTCAACGC CTCCGGCCGAGCTTTCTACTCCTTCCCCATCCAGCTCTACGACCCGTCCAACAATCTCACCACCAATTTCACCACTTACTTCGAATTCCAAATCTTCTTC CCCAACCAAGACAATGTCAACGCCACTTCCGGCGGAGGGTTCGCCTTCTTCTTAACCTCCCAGAACAGATCCTCCGTCGTCCCTCGCGGCTCCGCCGGTG GGATGCTCGGCCTGTTCGATCGGACCGACAACGGCAACGATTCGAATCAAATCGTCGCCGTTGAATTCGATACTTTCAGGGACCCCTGGGACCCCAGCTC CAATCACGTCGGGATAAACGTCAATTCCGTGGTTTCGATCGCCAATCGGACTTGGAACAGTACTTTGGTAAGCAACGACATATACGGCGCGACAATTTCT TACGACGGTGGGTCGAATCTCCTCACTGTTTTCCTCAAGGATCCGGATATTCCGAACGATTTCGGATCGTTGAGATTTAGTCAGAGAGTCAACTTGAGGG AGTTCCTCCCCGAAAGAGTGATGATTGGATTCTCTGCTTCCACGGGGAGTGCTGTTGCAATTCAGAACATTCGGAGCTGGAATTTCACTTCCACTCTCGC GGATATTCCGGTCGCCGGAGAAGGTGGTCAAAATGGCGGCGGAGGAGGCGGCGGTGGTAATGACGGCGGCGGCGGGTTTCAGAGTTGGATGGTTGGTTTG ATTGCAGGGGTGTTGCTTGGAGCTTCCGTTGCCCTTTATATGGTAAGGAGGAAGAAACTGCAAAAACAGAGAGAAAAAGCAGAGGCGGAGGACGATGATG AAGATGACGATGATGATGATTCAATGGATGGAGATATTGGTTGGGGATCAACAGGTCCAAAGAAGTTCAGTTACAAGGAGCTGGTTTTCGCAACGGACAA TTTTTCGGAGGAAGGGAAGCTCGGCCAAGGCGGGTTCGGAGGTGTTTACAAGGGCTACTTGAAGGATCTTGAAGCAGAAGTTGCAGTGAAGAAAGTGTCA AGTGGATCAAAGCAAGGGAAAAAAGAGTACATCTCTGAAGTAATGACTATAAGCAGATTGCGCCATAGGAATCTTGTTCAGCTGGTGGGTTATAGCCACA AGAAGGGAAGTTTCGTACTTGTTTACGAGTTCATGCACAACGGAAGTCTAGATGCACATCTATTCGGAAAGAAGAAAAAAGTGGCTCCGCTCGAATGGGG CATCAGGTTCAAAATAGCGCAAGGTTTGGCTTCCGCGTTGCTCTACCTCCACGAGGAGTGGGAGCAGTGCGTGGTCCACCGCGATATAAAGTCGAGCAAC GTGATGCTCGACTCCAATTTTAATGCTAAGCTTGGCGACTTCGGGCTGGCCAAGCTTATTGATCATAATCTCGGGTCTCAGACCACGGTTGTGGCGGGGA CCATGGGGTACATGGCTCCCGAATATCTTATGACTAGCAAGGCGAGTAAAGAGTCGGACGTTTACAGTTTCGGAGTAGTGGCGTTGGAGATTGCGTGCGG GAGGAAAGCAGTGGAACACAGGGAGGAAGAGTCGAAGGTGGTTTTGGTGAATTGGGTTTGGGAGCTTTACGGACAAGGGAAGATTGTTGAAGCGGCTGAT GAAGCGCTTGTGGGAGAGTTTGAGGAGGGTGAGATTGTGCGCCTGATGACGGTCGGATTGTGGTGTGCTCATCCAGATCATACTCTGAGACCTTCGATAA GGCAAGCGATTCAGGTGCTGAATTTTGAAGCCGTGTTGCCAAGCCTTCCGCCCCAGATGCCGGTACCTTCTTTTTATGCGCCGCGAATTGAGAACTTCAA CTCCTTGTTGACGTACACTGTTTCGAGTGAAGTGAATGGGGAAATGTCTCCGTGCTCGACTAGTTCTACCCAGAATTTGATTTATAGTAGTACAGTTAGC TCAACCAACTCATGA
AA sequence Show only first row Show all	>Lus10020456 pacid=23139588 polypeptide=Lus10020456 locus=Lus10020456.g ID=Lus10020456.BGIv1.0 annot-version=v1.0 MDHHHPLFLLFTLLCLSTAAATNFTYSSFSANDPNITVLNATTKGPNLGHDSILLTSSQIFNTIFNASGRAFYSFPIQLYDPSNNLTTNFTTYFEFQIFF PNQDNVNATSGGGFAFFLTSQNRSSVVPRGSAGGMLGLFDRTDNGNDSNQIVAVEFDTFRDPWDPSSNHVGINVNSVVSIANRTWNSTLVSNDIYGATIS YDGGSNLLTVFLKDPDIPNDFGSLRFSQRVNLREFLPERVMIGFSASTGSAVAIQNIRSWNFTSTLADIPVAGEGGQNGGGGGGGGNDGGGGFQSWMVGL IAGVLLGASVALYMVRRKKLQKQREKAEAEDDDEDDDDDDSMDGDIGWGSTGPKKFSYKELVFATDNFSEEGKLGQGGFGGVYKGYLKDLEAEVAVKKVS SGSKQGKKEYISEVMTISRLRHRNLVQLVGYSHKKGSFVLVYEFMHNGSLDAHLFGKKKKVAPLEWGIRFKIAQGLASALLYLHEEWEQCVVHRDIKSSN VMLDSNFNAKLGDFGLAKLIDHNLGSQTTVVAGTMGYMAPEYLMTSKASKESDVYSFGVVALEIACGRKAVEHREEESKVVLVNWVWELYGQGKIVEAAD EALVGEFEEGEIVRLMTVGLWCAHPDHTLRPSIRQAIQVLNFEAVLPSLPPQMPVPSFYAPRIENFNSLLTYTVSSEVNGEMSPCSTSSTQNLIYSSTVS STNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10530			Concanavalin A-like lectin pro...		Lus10020456 [exp]	0	1
AT1G11300			protein serine/threonine kinas...		Lus10023391 [exp]	1.0	0.9881
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10031388 [exp]	3.5	0.9830
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10030589 [exp]	3.7	0.9847
AT1G70170		MMP	matrix metalloproteinase (.1)		Lus10029207 [exp]	4.0	0.9759
AT5G36970		NHL25	NDR1/HIN1-like 25 (.1)		Lus10020783 [exp]	6.0	0.9798
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10022722 [exp]	6.8	0.9673
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10023701 [exp]	7.5	0.9828
					Lus10000858 [exp]	8.4	0.9802
AT5G02790		GSTL3	Glutathione transferase L3, Gl...		Lus10015049 [exp]	10.6	0.9783
AT2G23770			protein kinase family protein ...		Lus10000577 [exp]	11.0	0.9751

Compare expression of checked genes

Lus10020456 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.