Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16720 58 / 4e-09 Protein of unknown function, DUF593 (.1) AT1G18265 56 / 9e-09 Protein of unknown function, DUF593 (.1) AT1G70750 56 / 2e-08 Protein of unknown function, DUF593 (.1) AT4G13630 46 / 3e-05 Protein of unknown function, DUF593 (.1.2) AT1G74830 45 / 4e-05 Protein of unknown function, DUF593 (.1) AT4G13160 44 / 0.0001 Protein of unknown function, DUF593 (.1) AT5G06560 44 / 0.0001 Protein of unknown function, DUF593 (.1) AT1G18990 43 / 0.0002 Protein of unknown function, DUF593 (.1) AT3G54740 41 / 0.0007 Protein of unknown function, DUF593 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007082 [exp] 337 / 6e-116 AT1G18265 78 / 2e-16 Protein of unknown function, DUF593 (.1) Lus10010755 [exp] 130 / 4e-36 AT5G16720 81 / 2e-17 Protein of unknown function, DUF593 (.1) Lus10035638 [exp] 127 / 3e-35 AT1G18265 72 / 6e-15 Protein of unknown function, DUF593 (.1) Lus10004050 [exp] 55 / 5e-08 AT5G16720 290 / 7e-87 Protein of unknown function, DUF593 (.1) Lus10002289 [exp] 52 / 3e-07 AT5G16720 293 / 6e-88 Protein of unknown function, DUF593 (.1) Lus10007129 [exp] 48 / 6e-06 AT4G13630 160 / 7e-42 Protein of unknown function, DUF593 (.1.2) Lus10016673 [exp] 47 / 1e-05 AT4G13630 237 / 6e-70 Protein of unknown function, DUF593 (.1.2) Lus10033854 [exp] 45 / 5e-05 AT2G30690 213 / 6e-59 Protein of unknown function, DUF593 (.1) Lus10014743 [exp] 44 / 0.0001 AT2G30690 204 / 3e-56 Protein of unknown function, DUF593 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G078800 [exp] 103 / 2e-25 AT1G18265 71 / 3e-14 Protein of unknown function, DUF593 (.1) Potri.013G043400 [exp] 49 / 4e-06 AT1G08800 227 / 2e-61 Protein of unknown function, DUF593 (.1.2) Potri.019G012200 [exp] 47 / 2e-05 AT1G08800 239 / 1e-65 Protein of unknown function, DUF593 (.1.2) Potri.008G132200 [exp] 46 / 2e-05 AT1G70750 288 / 1e-84 Protein of unknown function, DUF593 (.1) Potri.019G007802 [exp] 46 / 3e-05 AT1G08800 221 / 3e-61 Protein of unknown function, DUF593 (.1.2) Potri.017G129200 [exp] 45 / 4e-05 AT5G16720 286 / 2e-84 Protein of unknown function, DUF593 (.1) Potri.004G087600 [exp] 45 / 4e-05 AT5G16720 281 / 2e-82 Protein of unknown function, DUF593 (.1) Potri.012G073400 [exp] 45 / 7e-05 AT1G74830 390 / 2e-129 Protein of unknown function, DUF593 (.1) Potri.010G109900 [exp] 45 / 8e-05 AT1G70750 277 / 2e-80 Protein of unknown function, DUF593 (.1) Potri.017G055100 [exp] 42 / 0.0004 AT4G13630 211 / 2e-59 Protein of unknown function, DUF593 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04576 [flax] [poplar] Zein-binding Zein-binding
Representative CDS sequence Show only first row Show all	>Lus10020457 pacid=23139578 polypeptide=Lus10020457 locus=Lus10020457.g ID=Lus10020457.BGIv1.0 annot-version=v1.0 ATGCAGCAGATCGTGAATGGCGTTTGTTCTGCGGTGTTTATATGCTCTGTTCTTGAATTCCACAAGAGGATCCTGCGTCTCTTCCTAGGCCTATTCCTGA TGGAATGCGCCGCCTGCCTCAAATTCCTAGCTCGAATCAGCGAGTCCCGCGGTGGCTTTCTGGTGTTCGGATGTTTCTCCAAGGCCTTCAATTTCCTCTG GCTGTTTCTACTTTTCGCTTTTGGATTCAAGCTCCTTCAGTTCACTCCCTTCTGGATTGGCCTTGTTTTCCACTCTGCTGCTAGAGGTAAATCGATTCAT TCCAGAAATGGATTCTCTTTTATCAAGATTTTTAATTTGACAGTCCAATCAAAGGCCGTGACGCCGCCTTTCGAATCTGGTTTTGAGAATGAGGAATCAA ATTCCAAGGTTAAGGATGAAGTTAATGATTCTGAGACGGAAGATTATGAATTTGATGTGTTGGCATTGAGGAAGTTGGTTCGGATTGAGAGGAAGAGAGC TGAAGCGGCTGAATTGGAGCTGGAGAAGGAAAGGCTGGCTGCTGCATCAGCTGCCGACGAAACAATGGCGATGATCCTTAGGATTCAGAATGAGAAAAGC TATTTGGAGATTGGAGCCAACCAATACCGCAGAGTGGCGGAACAGAAGCAGGAGTATGATCAAGAAGTGATACATTCGCTTCGCTGGATAATCACGAAAC ATGAATGTGAAAGGAGTTTGCTGGAAGAGAAGCTGCAAATTTGCAAGGGGAAATTGCAGCAGTACTTGAACAGACATGAAATGGATGAACTTGACTCGGT TTTTAGTTCATTAGATTCGAGTTTTGAAGATCTTGATCTGGATGATACAGGAGGAGGAGATGGGTTGATGATGATGATGGGATTTGAATCTCCTGCTGTT CAGACAAAGGTTTTTCAAAGCAGCAGTGGGGAATTGAGTGAATGA
AA sequence Show only first row Show all	>Lus10020457 pacid=23139578 polypeptide=Lus10020457 locus=Lus10020457.g ID=Lus10020457.BGIv1.0 annot-version=v1.0 MQQIVNGVCSAVFICSVLEFHKRILRLFLGLFLMECAACLKFLARISESRGGFLVFGCFSKAFNFLWLFLLFAFGFKLLQFTPFWIGLVFHSAARGKSIH SRNGFSFIKIFNLTVQSKAVTPPFESGFENEESNSKVKDEVNDSETEDYEFDVLALRKLVRIERKRAEAAELELEKERLAAASAADETMAMILRIQNEKS YLEIGANQYRRVAEQKQEYDQEVIHSLRWIITKHECERSLLEEKLQICKGKLQQYLNRHEMDELDSVFSSLDSSFEDLDLDDTGGGDGLMMMMGFESPAV QTKVFQSSSGELSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18265			Protein of unknown function, D...		Lus10020457 [exp]	0	1
AT3G29200		ATCM1, CM1	ARABIDOPSIS THALIANA CHORISMAT...		Lus10032998 [exp]	3.0	0.9104
AT5G48790			Domain of unknown function (DU...		Lus10007599 [exp]	4.9	0.8671
AT2G40120			Protein kinase superfamily pro...		Lus10028283 [exp]	5.7	0.9031
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10036571 [exp]	8.7	0.8475
AT3G25900		HMT-1, ATHMT-1	Homocysteine S-methyltransfera...		Lus10041451 [exp]	8.9	0.8828
AT4G04960			Concanavalin A-like lectin pro...		Lus10025441 [exp]	11.5	0.8527
AT1G15880		ATGOS11, GOS11	golgi snare 11 (.1)		Lus10014349 [exp]	14.1	0.8545
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10005390 [exp]	14.7	0.8630
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10010403 [exp]	17.1	0.8830
AT2G32800		AP4.3A	protein kinase family protein ...		Lus10016674 [exp]	19.1	0.8495

Compare expression of checked genes

Lus10020457 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.