Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45650 941 / 0 subtilase family protein (.1) AT5G45640 750 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G59810 610 / 0 ATSBT5.4 Subtilase family protein (.1) AT5G67360 609 / 0 ARA12 Subtilase family protein (.1) AT2G04160 603 / 0 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT2G05920 551 / 0 Subtilase family protein (.1) AT3G14067 543 / 0 Subtilase family protein (.1) AT5G51750 542 / 0 ATSBT1.3 subtilase 1.3 (.1) AT4G34980 527 / 8e-177 SLP2 subtilisin-like serine protease 2 (.1) AT3G14240 526 / 2e-176 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007083 [exp] 1496 / 0 AT5G45650 956 / 0.0 subtilase family protein (.1) Lus10026062 [exp] 1108 / 0 AT5G45650 857 / 0.0 subtilase family protein (.1) Lus10002780 [exp] 1101 / 0 AT5G45650 909 / 0.0 subtilase family protein (.1) Lus10016064 [exp] 600 / 0 AT2G04160 975 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10038774 [exp] 595 / 0 AT5G59810 839 / 0.0 Subtilase family protein (.1) Lus10039086 [exp] 592 / 0 AT5G59810 850 / 0.0 Subtilase family protein (.1) Lus10039085 [exp] 591 / 0 AT5G59810 827 / 0.0 Subtilase family protein (.1) Lus10039087 [exp] 586 / 0 AT2G04160 810 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10038772 [exp] 577 / 0 AT5G59810 815 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G076700 [exp] 1062 / 0 AT5G45650 970 / 0.0 subtilase family protein (.1) Potri.001G468800 [exp] 622 / 0 AT5G59810 939 / 0.0 Subtilase family protein (.1) Potri.011G165900 [exp] 618 / 0 AT2G04160 882 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.014G171600 [exp] 612 / 0 AT2G04160 986 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G469000 [exp] 595 / 0 AT5G59810 754 / 0.0 Subtilase family protein (.1) Potri.006G001600 [exp] 583 / 0 AT5G59810 970 / 0.0 Subtilase family protein (.1) Potri.001G468900 [exp] 582 / 0 AT5G59810 730 / 0.0 Subtilase family protein (.1) Potri.014G018900 [exp] 579 / 0 AT5G67360 994 / 0.0 Subtilase family protein (.1) Potri.009G144500 [exp] 572 / 0 AT5G59810 508 / 9e-170 Subtilase family protein (.1) Potri.011G050300 [exp] 571 / 0 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10020458 pacid=23139561 polypeptide=Lus10020458 locus=Lus10020458.g ID=Lus10020458.BGIv1.0 annot-version=v1.0 ATGACTACTCCCAGTAACCGTAATTATCTTCTCCTCCTCCTCCTCCTTTGTTTTTCTCTTCTGGCAGTCGCCGCCGTCAACTGTGAAGCTGAACAAAAAC AACGGACTTACATAGTCTACTTACGAGGAGATCATGAGCACATTAGTAGTACTAGTGGTGTGGACGAGATATCACAAACCCACCACTCCTATTTGTCTTC CGTCAAGGAATCCGACGAAGATGCCGCTTCCTCCCTCATCTATAGCTACAAACACAGCTTCAATGGCTTCGCCGCTTCCCTCTCCCCTCAACAAGCCTCC AAACTCAAAGAAATGGAGCAAGTGGTGGGGGTAGTAGAGAGCCGGCCGGGGAAGTACTCAACCCAAACTACGAGGTCTTGGGAATTCTCGGGGCTGAATG AGGCAGCTGCTTATGATTCCAATAATAAAGGGTTTGATGATCAGTTGAAGAATTACGTGCTTCACAGGGCTGGCTATGGCAAGTCCATAATTGTTGGGGT CTTGGATAGTGGGGTGTGGCCAGAGGCAGAAAGTTTTGGCGATGAAGGGATGGGAGCCATCCCAAAATCATGGAAAGGAATCTGCCAAAATGGCTCTCAT TTCAACTCTTCTCATTGTAACAATAAAATAATTGGGGCAAGGTACTACCTTAAGGGCTTCGAGAGATACTACGGCAAGTTGAACGAAACCGAGGACTCCA GGTCACCACGTGACATGGACGGTCATGGGACCCATACGGCCTCCACCATCTTGGGCCGGCAAGTCCACAACGCCTCCGCATTCGGCGGCTTTGCCCGTGG TACGGCTTCCGGCGGTGCTCCGTTAGCCCGGCTAGCTGTGTACAAGGTGTGTTGGGCCATCCCCAATAAAGAAAAATCTAACGGGAATACTTGCTTTGAG GAGGACATGCTGGCTGCCATGGACCAAGCAATCGCCGATGGCGTCCATGTCATCAGCATCTCTATCGGCTCCGATACCCCTATCAACCACACCGACGATG GGATTTCGATCGGAGCGTTTCACGCCTTGAAGAGAAACGTAGTTGTCGTATGCGCAGCTGGCAATTCGGGTCCCACACCTTCCACCCTGTCAAATCCTGC TCCGTGGATCATGACGGTTGGTGCTAGCAGCTTGGATCGTACGTTTCATGGGCCTATTGTTCTCGGAAGCGGGAAAACAATAACGGGTCAAACAGTGACG CCAGGCAAACTTGACAAAGCGCTTCCATTGATATACGCGGCGGAGGCAGTCCGCCCCAATGTGCCCAATAACGAAACCAACCAATGCCTTCCGAACTCGT TGTCCCCTGAAAAGGTAAAAGGCAAGATAGTGTTTTGCATGAGAGGTACAGGAATGAGAGTTGGCAAAGGCATAGAAGTGAAAAGGGCGGGCGGCGCCGG CTTCATCCTAGGAAACGCTGCCGCAAACGGCGACGAGGTCTCCGTGGACGCACACGTGCTTCCCGGTACGGCCGTCGTGTACAAGGACGCGCTTGAGATC ATCGAGTACATCAACTCGACAACGAATCCAACGGCCCAGATTGGAGAAACGAAGACCGTGTTACGGTACAGGCCCGCCCCTTCCATGGCCGCTTTCAGTA GTCGGGGTCCTAACGTCATCCATCCCTATGTTCTCAAGCCGGACATCTCAGCTCCAGGGCTAAATATACTAGCGGCATGGAGCCAAGCTTCATCCCCGAC TAAACTGTCCGGGGACAATCGAATCGTTAAGTATAATATCGAATCCGGAACGTCCATGGCTTGCCCGCATGTTACTGGTTTAGCCGCACTTCTCAAAGCA ATCCATCCCACCTGGAGTACCGCCGCCGTTAGATCTGCCATCACTACCTCTGCTTGGACGAGGAACAACATGGGCGGGGCAATAACCGACCCGTCGGGGA AACCCGCAACACCCTTCGCCTTCGGGTCGGGTCACTTCCGTCCTTTGAAGGCAGCCGATCCTGGACTTGTATACGACGCGTCGTATAAGGACTACTTCCT CTATCTCTGCAGCTTCGGAGTGAAAAACGCCGACTCAAAATTCGAGTGTCCGGAATCTTCGCCGCCAGAATACGACCTCAACTACCCTTCTGTGTCGGTG CCGAAATTGAACGGTACGATAACCATCAAGAGGACGGTGACGAACGTGGGCGGTGTAGGGGAAGCAGTGTACTTTTTCAGTGTCAGTGCGAAGCCGCCGT TGGGGATATCGGTGAAGGCAAAGCCGAGCGTTTTGTTCTTCAGCCGGGTTGGGGAGCGGAAGAGCTTCACGTTGACGATCAGGGCGCGGAATGGGAAGGA GGCGGGGAATTACAAGGGTGATGAGTATGGATTTGGGTGGTATACTTGGAGGGATAATTATCATGTTGTCAGAAGTCCTATGGCGGTATCCTTAGCCTAA
AA sequence Show only first row Show all	>Lus10020458 pacid=23139561 polypeptide=Lus10020458 locus=Lus10020458.g ID=Lus10020458.BGIv1.0 annot-version=v1.0 MTTPSNRNYLLLLLLLCFSLLAVAAVNCEAEQKQRTYIVYLRGDHEHISSTSGVDEISQTHHSYLSSVKESDEDAASSLIYSYKHSFNGFAASLSPQQAS KLKEMEQVVGVVESRPGKYSTQTTRSWEFSGLNEAAAYDSNNKGFDDQLKNYVLHRAGYGKSIIVGVLDSGVWPEAESFGDEGMGAIPKSWKGICQNGSH FNSSHCNNKIIGARYYLKGFERYYGKLNETEDSRSPRDMDGHGTHTASTILGRQVHNASAFGGFARGTASGGAPLARLAVYKVCWAIPNKEKSNGNTCFE EDMLAAMDQAIADGVHVISISIGSDTPINHTDDGISIGAFHALKRNVVVVCAAGNSGPTPSTLSNPAPWIMTVGASSLDRTFHGPIVLGSGKTITGQTVT PGKLDKALPLIYAAEAVRPNVPNNETNQCLPNSLSPEKVKGKIVFCMRGTGMRVGKGIEVKRAGGAGFILGNAAANGDEVSVDAHVLPGTAVVYKDALEI IEYINSTTNPTAQIGETKTVLRYRPAPSMAAFSSRGPNVIHPYVLKPDISAPGLNILAAWSQASSPTKLSGDNRIVKYNIESGTSMACPHVTGLAALLKA IHPTWSTAAVRSAITTSAWTRNNMGGAITDPSGKPATPFAFGSGHFRPLKAADPGLVYDASYKDYFLYLCSFGVKNADSKFECPESSPPEYDLNYPSVSV PKLNGTITIKRTVTNVGGVGEAVYFFSVSAKPPLGISVKAKPSVLFFSRVGERKSFTLTIRARNGKEAGNYKGDEYGFGWYTWRDNYHVVRSPMAVSLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45650			subtilase family protein (.1)		Lus10020458 [exp]	0	1
					Lus10037765 [exp]	2.8	0.8684
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10002836 [exp]	4.9	0.8562
AT2G42800		AtRLP29	receptor like protein 29 (.1)		Lus10010946 [exp]	5.9	0.9082
AT5G60370			unknown protein		Lus10023342 [exp]	9.6	0.9019
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10033906 [exp]	13.2	0.7671
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10032873 [exp]	16.7	0.8074
AT3G54200			Late embryogenesis abundant (L...		Lus10018361 [exp]	17.2	0.8562
AT2G42800		AtRLP29	receptor like protein 29 (.1)		Lus10031383 [exp]	21.3	0.8853
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10026927 [exp]	22.4	0.8220
AT2G47940		EMB3117, DEGP2	EMBRYO DEFECTIVE 3117, DEGP pr...		Lus10005931 [exp]	24.4	0.8776

Compare expression of checked genes

Lus10020458 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.