Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14170 844 / 0 ALDH6B2 aldehyde dehydrogenase 6B2 (.1.2.3) AT1G79440 191 / 3e-54 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT3G48170 189 / 1e-53 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT3G24503 187 / 5e-53 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) AT1G23800 186 / 3e-52 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT1G74920 185 / 4e-52 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT3G48000 181 / 2e-50 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT2G24270 162 / 6e-44 ALDH11A3 aldehyde dehydrogenase 11A3 (.1.2.3.4) AT1G54100 157 / 5e-42 ALDH7B4 aldehyde dehydrogenase 7B4 (.1.2) AT3G66658 117 / 9e-28 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007084 [exp] 994 / 0 AT2G14170 850 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Lus10042149 [exp] 186 / 2e-52 AT1G74920 850 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10023625 [exp] 181 / 9e-51 AT3G24503 749 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10001845 [exp] 181 / 2e-50 AT1G79440 741 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Lus10023626 [exp] 176 / 2e-48 AT3G24503 753 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10034115 [exp] 175 / 6e-48 AT3G48170 825 / 0.0 aldehyde dehydrogenase 10A9 (.1) Lus10024259 [exp] 172 / 2e-47 AT3G24503 745 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10029166 [exp] 169 / 7e-46 AT1G23800 886 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10012999 [exp] 168 / 2e-45 AT1G23800 889 / 0.0 aldehyde dehydrogenase 2B7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G078600 [exp] 903 / 0 AT2G14170 893 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Potri.001G283100 [exp] 899 / 0 AT2G14170 891 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Potri.001G242333 [exp] 899 / 0 AT2G14170 895 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Potri.009G078700 [exp] 764 / 0 AT2G14170 753 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Potri.005G147700 [exp] 733 / 0 AT2G14170 763 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Potri.010G174000 [exp] 212 / 6e-62 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Potri.002G189900 [exp] 189 / 2e-53 AT1G23800 899 / 0.0 aldehyde dehydrogenase 2B7 (.1) Potri.015G070600 [exp] 189 / 2e-53 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.012G075600 [exp] 187 / 4e-53 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.018G075000 [exp] 184 / 8e-52 AT3G24503 751 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [flax] [poplar] ALDH-like PF00171 [flax] [poplar] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Lus10020459 pacid=23139520 polypeptide=Lus10020459 locus=Lus10020459.g ID=Lus10020459.BGIv1.0 annot-version=v1.0 ATGTCTCTCCAATCATCTGTCCAACGGGTGAGAAAACTGGGTGGATTAAGGCCTCAGATCCTTGGTTCGATGGCGAGGTCTCACTTCACTACTACTGCTA CCCAGCCTTCTTCTTCTTCCAATCAATCTACCCCTCCGAGGGTTCCCAATCTCATTGGAGGTTCCTTCGTTGATTCGAAGTCATCTTCAGCAATTGATGT GATCAATCCAGCCACTCAAGAGGTTGTATCTCAACTTCCATTAACCACAAATGAAGAGTTTAAAGCTGCGGTCTCTGCAGCAAAGAATGCTTTCAAGTCA TGGCGTCACACTCCAATTACGACCCGCCAGAGGGAGAAACTTGCGTTAAATATCACAACTGAACAAGGGAAGACATTGAAAGATGCGCATGGAGATGTAT TTCGTGGACTAGAGGTGGTTGAACATGCTTGTGGAATGGCAACCCTGCAAATGGGGGAGTATGTTCCTAATGTGGCTCATGGAATTGATACATATAGCAT AAGAGAGCCACTAGGTGTATGTGCTGGGATTTGCCCATTTAACTTTCCAGCTATGATTCCTTTATGGATGTTTCCTGTTGCAGTTACTTGTGGCAATACC TTTGTTCTGAAACCATCAGAGAAAGATCCAGGGGCTTCGGTCATGCTTGCTGAACTGGCAATGGAGGCTGGTTTGCCTGAAGGTGTTCTGAACATTGTAC ATGGCACTAATGATATTGTCAATGCTATTTGTGATGATGAGGATATCAAAGCAGTATCATTTGTTGGTTCTAATACAGCTGGCATGCACATTTATTCAAG GGCTTCTGCCGCAGGAAAGCGTGTTCAGTCCAACATGGGTGCAAAAAATCATGCAATCGTCATGCCTGATGCTAATATCGACGCTACTATAAATGCTTTA GTGGCTGCTGGCTTTGGTGCTGCCGGTCAGAGATGTATGGCACTGAGCACGGTGGTTTTTGTTGGAGATTCGAAACCATGGTTGAAGAAACTTGTCCAGT CTGCAAAGGCCTTGAAAGTAAATTCTGGAACAGAACCTGATGCTGACCTGGGGCCAGTCATTAGCAAGCAGGCCAAGGAACGGATACACAGATTAATTCA AAGTGGGGTGGAAAGTGGCGCTGAGCTAGTGCTTGATGGGAGAAGTATAGTGGTTCCAGGATATGAGAATGGAAACTTTGTTGGTCCAACCATCTTAGCA AGTGTCAGACCGGATATGGAATGCTACAAGGAGGAAATCTTTGGCCCTGTTCTTATTTGCATGGAGGCTGACAGCTTTGACGAAGCCATCAACATCGTGA ACCGAAACAAATATGGCAACGGAGCTTCCATCTTCACTGCATCTGGAGCTGCTGCGAGGAAGTTCCAGAGTGAAATAGAGTGCGGACAGGTTGGCATTAA CGTTCCAATCCCAGTTCCATTGCCATTCTTCTCCTTCACCGGAAACAAGGCTTCATTTGCCGGAGACCTGAACTTCTATGGGAAAGCAGGAGTGAACTTT TACACACAGATGAAAACAATAACTCAACAATGGAAGGATTTGCCGGATGGGAGTGGAGTTTCACTTGCAATGCCTACCTCTCAGTAG
AA sequence Show only first row Show all	>Lus10020459 pacid=23139520 polypeptide=Lus10020459 locus=Lus10020459.g ID=Lus10020459.BGIv1.0 annot-version=v1.0 MSLQSSVQRVRKLGGLRPQILGSMARSHFTTTATQPSSSSNQSTPPRVPNLIGGSFVDSKSSSAIDVINPATQEVVSQLPLTTNEEFKAAVSAAKNAFKS WRHTPITTRQREKLALNITTEQGKTLKDAHGDVFRGLEVVEHACGMATLQMGEYVPNVAHGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPVAVTCGNT FVLKPSEKDPGASVMLAELAMEAGLPEGVLNIVHGTNDIVNAICDDEDIKAVSFVGSNTAGMHIYSRASAAGKRVQSNMGAKNHAIVMPDANIDATINAL VAAGFGAAGQRCMALSTVVFVGDSKPWLKKLVQSAKALKVNSGTEPDADLGPVISKQAKERIHRLIQSGVESGAELVLDGRSIVVPGYENGNFVGPTILA SVRPDMECYKEEIFGPVLICMEADSFDEAINIVNRNKYGNGASIFTASGAAARKFQSEIECGQVGINVPIPVPLPFFSFTGNKASFAGDLNFYGKAGVNF YTQMKTITQQWKDLPDGSGVSLAMPTSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Lus10020459 [exp]	0	1
AT3G48860			unknown protein		Lus10036015 [exp]	3.5	0.9168
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10025220 [exp]	9.5	0.8908
AT5G15080			Protein kinase superfamily pro...		Lus10030668 [exp]	11.7	0.8532
AT5G53460		GLT1	NADH-dependent glutamate synth...		Lus10019020 [exp]	12.5	0.8633
AT1G27980		DPL1, ATDPL1	dihydrosphingosine phosphate l...		Lus10003129 [exp]	14.1	0.8821
AT1G54610			Protein kinase superfamily pro...		Lus10004144 [exp]	14.8	0.8683
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Lus10013155 [exp]	18.7	0.8941
AT3G08860		PYD4	PYRIMIDINE 4 (.1)		Lus10025262 [exp]	19.5	0.8572
AT5G53850			haloacid dehalogenase-like hyd...		Lus10015967 [exp]	22.6	0.8505
AT1G55680			Transducin/WD40 repeat-like su...		Lus10037252 [exp]	23.6	0.8695

Compare expression of checked genes

Lus10020459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.