Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19380 52 / 4e-07 RNA recognition motif (RRM)-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G283000 [exp] 59 / 2e-09 AT1G74520 98 / 1e-23 HVA22 homologue A (.1) Potri.009G078500 [exp] 50 / 2e-06 AT1G74520 104 / 6e-26 HVA22 homologue A (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020460 pacid=23139610 polypeptide=Lus10020460 locus=Lus10020460.g ID=Lus10020460.BGIv1.0 annot-version=v1.0 ATGGAGTGTTTAGTGAAGTATCTATTTCAATGCTTCCCCACATTTGCTAACAACAACAACAACAATTCATCCTGTGTTCTGAAAGATGGCGGAAAGCAGG AGGCACACAACGTCAAGCAAGATTGCAATATCAGTAATGATGCTAATGGAAAAACTTCTGCTGTCGAGGCAGTAACAATATCAGAAGCAGGTGGAGGAGG AGAGCAAGCAGAGCAGGAATTAGACGCTCCGGCGGAGACTTGGTGGAGGTGTTACCTTTGCAACGTGAAAGTGGCGCGTGAGGAAACGTTGAACGCTCAC CTCCAAGGGAAGAAACACAGGCGGAGACTGACCAACCAGATATCGATTGTTGAGGAGAAGGGTGTTGGAGTGGGCATATTGGAGGGAAAATCTCCGAATG TTATTACTAGAGTGCTGCGCACCGGTGACAGCGCGTGGATATGTGAAAAGTGCCATGCTACCTGCAGTTGCAAGGAAAACTTGGTCGATCATCTGCTTGG TCAAAAACACGCTACCATTGTCAGTACCAAAGTCATTGCCAGTCAGTTGTTCTCTCTTATGGATCCGCGGCGGTGCTTGAAAGATGCCGGAAAATACAAC GTGGAGGAGGATGAGGTGGAGGTCACCAACAACAACAACAAGGAAGATTTAAATGCTAATAGTAACATCATTAATAATGCATTTAAACCGCCCGCGCCGC AGAACCACCGCCAGCAGCAGCAGGAATTAATAATGAAAGCTCCGCCGGCGCTGGAGACAAAGACTTGTTGGAGATGTGACCTGTGCGATATGAAGGTGGC GCGTGAGGCAACGTTGAACGGTCACTTACGAGGGAAGAACCATCGGAGGACAGTGCTGAACCAGCTATGGATAGTGGAGGCGAGCGGTGACGAGAGTGAA TTGGAATTGGTATCTCCATATGTGATGCGCAACTGTAACGGCAGGTGGATGTGTTCACTGTGCGACTGCAGCTTCTGGTACAATGCCAACGTGGCTGATC ATCTCGTTGGCCAAAGACACGCCGCCAATCTTCTCTACTATTAA
AA sequence Show only first row Show all	>Lus10020460 pacid=23139610 polypeptide=Lus10020460 locus=Lus10020460.g ID=Lus10020460.BGIv1.0 annot-version=v1.0 MECLVKYLFQCFPTFANNNNNNSSCVLKDGGKQEAHNVKQDCNISNDANGKTSAVEAVTISEAGGGGEQAEQELDAPAETWWRCYLCNVKVAREETLNAH LQGKKHRRRLTNQISIVEEKGVGVGILEGKSPNVITRVLRTGDSAWICEKCHATCSCKENLVDHLLGQKHATIVSTKVIASQLFSLMDPRRCLKDAGKYN VEEDEVEVTNNNNKEDLNANSNIINNAFKPPAPQNHRQQQQELIMKAPPALETKTCWRCDLCDMKVAREATLNGHLRGKNHRRTVLNQLWIVEASGDESE LELVSPYVMRNCNGRWMCSLCDCSFWYNANVADHLVGQRHAANLLYY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19380			RNA recognition motif (RRM)-co...		Lus10020460 [exp]	0	1
AT2G01050			zinc ion binding;nucleic acid ...		Lus10032865 [exp]	4.5	0.7371
AT2G14830			Regulator of Vps4 activity in ...		Lus10018577 [exp]	10.6	0.6778
AT1G09380			nodulin MtN21 /EamA-like trans...		Lus10001523 [exp]	12.2	0.7149
					Lus10003695 [exp]	13.8	0.7041
					Lus10003774 [exp]	15.1	0.7041
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10005596 [exp]	16.3	0.7041
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Lus10014436 [exp]	17.4	0.7041
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Lus10015428 [exp]	18.5	0.7041
AT4G35700	C2H2ZnF	DAZ3	DUO1-activated zinc finger 3, ...		Lus10041633 [exp]	19.5	0.7041
AT3G55700			UDP-Glycosyltransferase superf...		Lus10040724 [exp]	20.4	0.7041

Compare expression of checked genes

Lus10020460 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.