Plant FIBer expression Database

Lus10020461 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10020461 pacid=23139522 polypeptide=Lus10020461 locus=Lus10020461.g ID=Lus10020461.BGIv1.0 annot-version=v1.0
ATGGCTTTAGGGGTTGTTGGAAAAGGTAACAACAATCAATCTTCTCCTCAACAGCCTGGTAGGAGTGAGGGTTTCAATTTTAAGAATCAACAAGGGGCCA
AAACAAATTTTAGAAACTGGAGGTTCCATTGTCCCACGTCCGCCAGATACCAAGGCCCAGAAGAAGAGGCCCAATACTCATACTCAGGCCAAACCGGCTA
TTTCTCCCAGGATAGTGCATGTGGTGGCGAATCCTCTCTTCTCGCGGGCCTGTTGTATAATTCGGATGTTCGTGAAGCCCAATCTCAAGTCGCTCTTGCT
GATGATGTCTCTCGCCGCATCGCTACTGCGTCTCCGTCCCCTCTCCCCCAACCGATCGCCTCTTCTGTTCATCCCCCGGAGATAAGCTCAGACGGCTTTA
TGGTTGAGACTACTGTGCTGCTATCTCTGACAGCCCTGTATCGGACTCCCGAGGCCGTTGCTTCTTCCGATTCCCAAGTCTCTTCACTGCAAGCTCCTCC
ATCCATGGCCACTGCTCCTCCTAAGTTGAAGTCGGCCGCTCGATCTTCTCCAGTATTATCGGGGATAGAAAGTGAGAGTGAAAGCGCGCATTTCATTCAT
TGA
AA sequence
>Lus10020461 pacid=23139522 polypeptide=Lus10020461 locus=Lus10020461.g ID=Lus10020461.BGIv1.0 annot-version=v1.0
MALGVVGKGNNNQSSPQQPGRSEGFNFKNQQGAKTNFRNWRFHCPTSARYQGPEEEAQYSYSGQTGYFSQDSACGGESSLLAGLLYNSDVREAQSQVALA
DDVSRRIATASPSPLPQPIASSVHPPEISSDGFMVETTVLLSLTALYRTPEAVASSDSQVSSLQAPPSMATAPPKLKSAARSSPVLSGIESESESAHFIH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10020461
[exp]
0 1
AT2G39380 ATEXO70H2 exocyst subunit exo70 family p... Lus10005435
[exp]
2.0 0.8926
AT1G01720 NAC ATAF1, ANAC002 Arabidopsis NAC domain contain... Lus10029692
[exp]
2.8 0.8946
AT5G41720 unknown protein Lus10006473
[exp]
3.2 0.8890
AT1G51760 JR3, IAR3 JASMONIC ACID RESPONSIVE 3, IA... Lus10030828
[exp]
3.9 0.9310
AT2G27690 CYP94C1 "cytochrome P450, family 94, s... Lus10043378
[exp]
5.5 0.8888
AT2G27690 CYP94C1 "cytochrome P450, family 94, s... Lus10019534
[exp]
5.7 0.8579
AT1G19180 ZIM TIFY10A, JAZ1 jasmonate-zim-domain protein 1... Lus10027648
[exp]
13.0 0.8593
AT1G19180 ZIM TIFY10A, JAZ1 jasmonate-zim-domain protein 1... Lus10039911
[exp]
13.9 0.8937
AT1G10010 AAP8, ATAAP8 amino acid permease 8 (.1) Lus10035663
[exp]
21.4 0.8242
AT2G18470 AtPERK4, PERK4 proline-rich extensin-like rec... Lus10024020
[exp]
21.6 0.7900

Lus10020461 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.