Plant FIBer expression Database

Lus10020462 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G09570 127 / 3e-38 Cox19-like CHCH family protein (.1)
AT5G64400 122 / 3e-36 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007086
[exp]
196 / 2e-65 AT5G09570 181 / 1e-59 Cox19-like CHCH family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G282900
[exp]
149 / 5e-47 AT5G09570 142 / 2e-44 Cox19-like CHCH family protein (.1)
Potri.009G078100
[exp]
141 / 7e-44 AT5G09570 127 / 2e-38 Cox19-like CHCH family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0351 CHCH PF06747 CHCH CHCH domain
Representative CDS sequence
>Lus10020462 pacid=23139523 polypeptide=Lus10020462 locus=Lus10020462.g ID=Lus10020462.BGIv1.0 annot-version=v1.0
ATGGCTCGCCGTAGCTCTAGCCGTAGCTCTAGCCGTGGCTTCGGAGGAGGAAGATCTGCTCGTAGCCCACCTCCTCAACCAGCCCATCAGGCTGCTCCTC
CTGCTGTTGCTCAGAGCAGTGGCGGTGGATCCATGCTTGGAGGGATTGGTTCGTCCATTGTTCAGGGGCTCGGTTTTGGTACTGGAAGTGCAGTTGCCCA
CAGAGCTGTTGATGCTGTGATGGGTCCTCGTACAATTCAACATGAAACTGTTGTCTCTGAAGCTGCTGGTATCCCAGCACCCGCTGCAAACACCATGTCT
GCTACTGATGGCTGCAATGTTCACACCAAGGCCTTCCAGGATTGCTTGAACACCTCCGGGAGCGACATCAGCAAGTGCCAGTTCTACATGGACATGCTGG
CGGAATGCAGGAAGAACTCTGGTTCCGGATTGACCGCCTAA
AA sequence
>Lus10020462 pacid=23139523 polypeptide=Lus10020462 locus=Lus10020462.g ID=Lus10020462.BGIv1.0 annot-version=v1.0
MARRSSSRSSSRGFGGGRSARSPPPQPAHQAAPPAVAQSSGGGSMLGGIGSSIVQGLGFGTGSAVAHRAVDAVMGPRTIQHETVVSEAAGIPAPAANTMS
ATDGCNVHTKAFQDCLNTSGSDISKCQFYMDMLAECRKNSGSGLTA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G09570 Cox19-like CHCH family protein... Lus10020462
[exp]
0 1
AT3G52880 ATMDAR1 monodehydroascorbate reductase... Lus10008633
[exp]
13.7 0.8616
AT5G61510 GroES-like zinc-binding alcoho... Lus10009658
[exp]
16.4 0.8807
AT3G25160 ER lumen protein retaining rec... Lus10003146
[exp]
17.3 0.8654
Lus10015401
[exp]
17.3 0.8675
AT5G15680 ARM repeat superfamily protein... Lus10031962
[exp]
30.8 0.8131
AT4G25150 HAD superfamily, subfamily III... Lus10007939
[exp]
33.8 0.8380
AT5G46860 SGR3, ATVAM3, A... SHOOT GRAVITROPISM 3, ARABIDOP... Lus10000311
[exp]
37.1 0.8543
AT4G31750 WIN2 HOPW1-1-interacting 2 (.1) Lus10042430
[exp]
37.9 0.8502
AT1G12550 HPR3 hydroxypyruvate reductase 3, D... Lus10006708
[exp]
42.9 0.8632
AT1G27450 APRT, ATAPT1, A... ARABIDOPSIS THALIANA ADENINE P... Lus10007757
[exp]
43.8 0.8624

Lus10020462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.