Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13235 505 / 1e-179 DDI1 DNA-damage inducible 1, ubiquitin family protein (.1.2.3) AT2G17190 44 / 0.0002 ubiquitin family protein (.1) AT1G53930 40 / 0.0005 Ubiquitin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007088 [exp] 638 / 0 AT3G13235 587 / 0.0 DNA-damage inducible 1, ubiquitin family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G166100 [exp] 532 / 0 AT3G13235 599 / 0.0 DNA-damage inducible 1, ubiquitin family protein (.1.2.3) Potri.001G469300 [exp] 519 / 0 AT3G13235 613 / 0.0 DNA-damage inducible 1, ubiquitin family protein (.1.2.3) Potri.006G045300 [exp] 42 / 0.0002 AT4G05050 54 / 7e-10 ubiquitin 11 (.1.2.3.4) Potri.005G011700 [exp] 38 / 0.001 AT2G35635 109 / 2e-32 RELATED TO UBIQUITIN 2, ubiquitin 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00240 [flax] [poplar] ubiquitin Ubiquitin family CL0214 [flax] [poplar] UBA PF00627 [flax] [poplar] UBA UBA/TS-N domain CL0129 [flax] [poplar] Peptidase_AA PF09668 [flax] [poplar] Asp_protease Aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10020464 pacid=23139574 polypeptide=Lus10020464 locus=Lus10020464.g ID=Lus10020464.BGIv1.0 annot-version=v1.0 ATGAGGATCACTATAATGACGTCTGATGAACAAATCAGCTCCTTGGATGTTGATCCAAACGAAACTGTTGAAAACATAAAAGCATTGCTCGAAGTGGAGA CTCAGGTCCCCCTTCAGCAACAACAGTTGTTTTATAATGGCAGAGAGATAAGGAATGCTGAAAAATTGAGTGCTCTCGGTGTTAAAGATGATGATTTGAT CATGATGGTTCCCAGGGCACCCAGCGCTCATTCAAATGACATGAGGTCCAATCCCGGTGACCCTTCAGAGAATGCTGCAGCCTTTCAAGAACAAGTACGG CGTGATCCCAATTTGATGTCCCAACTGTTTCAAGCTGACCCGGAACTTGCACAACTTGTTGTCGGAAATGATCTCAACAAACTTCAGGAGCTGTTAAAGC TGCGCCAACAGCAAAGATCTGAATTACGTCGCCGACAAGAGGCTGAACTTGCTCTTCTTGAGGCGGATCCTTTTGATGTTGAGGCCCAGAAGAAAATTGA AGCTGCCATTCGCCAGAAAGGCATTGATGAAAACTGGGAAGCAGCGCTGGAACATAATCCTGAGGCTTTTGCTAGGGTGGTTATGCTATACGTGGATATG GAGGTCAATGGTGTTCCTCTCAAGGCATTTGTTGACAGTGGCGCTCAGTCCACAATAATATCAAAAAGCTGTGCTGAGAAATGTGGATTGCTGAGGCTCT TAGACCAGCGTTACAAAGGTATTGCTCATGGTGTTGGTCAGTCAGAGATATTGGGCCGCATACATGTTGCTCCAATCAAGATTGGCACGATATTTTATCC TTGCTCCTTCTTGGTACTGGATTCTCCTAACATGGAATTCCTCTTTGGACTTGACATGCTTCGTAAGCACCAGGACATTCCACCTAGTTTTTTAGATGAG GAACGCTACAAAGAAGCATCTAGCTCCGGAAACCCTGCCGTGTCAGCAACATCTGGGAAGAAGAGTGATGCGCAAGTAGTAGGCGCACCATCTGGATCTG CAAGCGGAGGCAATATGAACCAGGGAGCTGAGTTTGAGGCGAAAGTTAGGAAGCTGGTGGAACTTGGGTTTGGAAGAGAAGCAGTGATTCAGGCGCTTCA ATTGTTCCAGGGGAATGAAGAACAGGCTGCTGGATTCCTATTCGGTGGATGA
AA sequence Show only first row Show all	>Lus10020464 pacid=23139574 polypeptide=Lus10020464 locus=Lus10020464.g ID=Lus10020464.BGIv1.0 annot-version=v1.0 MRITIMTSDEQISSLDVDPNETVENIKALLEVETQVPLQQQQLFYNGREIRNAEKLSALGVKDDDLIMMVPRAPSAHSNDMRSNPGDPSENAAAFQEQVR RDPNLMSQLFQADPELAQLVVGNDLNKLQELLKLRQQQRSELRRRQEAELALLEADPFDVEAQKKIEAAIRQKGIDENWEAALEHNPEAFARVVMLYVDM EVNGVPLKAFVDSGAQSTIISKSCAEKCGLLRLLDQRYKGIAHGVGQSEILGRIHVAPIKIGTIFYPCSFLVLDSPNMEFLFGLDMLRKHQDIPPSFLDE ERYKEASSSGNPAVSATSGKKSDAQVVGAPSGSASGGNMNQGAEFEAKVRKLVELGFGREAVIQALQLFQGNEEQAAGFLFGG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13235		DDI1	DNA-damage inducible 1, ubiqui...		Lus10020464 [exp]	0	1
AT4G00170			Plant VAMP (vesicle-associated...		Lus10010360 [exp]	2.0	0.8935
AT4G00170			Plant VAMP (vesicle-associated...		Lus10036495 [exp]	2.2	0.8880
AT1G48540			Outer arm dynein light chain 1...		Lus10017994 [exp]	4.0	0.8845
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10038383 [exp]	4.1	0.9092
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Lus10006784 [exp]	4.2	0.8561
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10022883 [exp]	5.3	0.9003
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031676 [exp]	6.0	0.8988
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10002206 [exp]	8.9	0.8095
AT4G36890		IRX14	irregular xylem 14, Nucleotide...		Lus10033785 [exp]	9.5	0.8848
AT4G24480			Protein kinase superfamily pro...		Lus10042868 [exp]	13.1	0.8747

Compare expression of checked genes

Lus10020464 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.