Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55750 606 / 0 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) (.1) AT3G61420 596 / 0 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007089 [exp] 1004 / 0 AT1G55750 546 / 0.0 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G107400 [exp] 760 / 0 AT1G55750 645 / 0.0 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) (.1) Potri.005G061432 [exp] 469 / 2e-162 AT1G55750 383 / 2e-129 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) (.1) Potri.005G061366 [exp] 291 / 4e-95 AT3G61420 233 / 9e-74 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03909 [flax] [poplar] BSD BSD domain
Representative CDS sequence Show only first row Show all	>Lus10020465 pacid=23139551 polypeptide=Lus10020465 locus=Lus10020465.g ID=Lus10020465.BGIv1.0 annot-version=v1.0 ATGTCGACCACCCAAGTGACGAAGTCGGTGAGGTACAAGACAGGAGTCAACAAGCCTGGCACTCCTGGCCGTCTGTCACTGATTAATCAAAGGTTGGTGT TTAGACCTAAACATCCAAACTCTGGATCGAAGCTTGACATGGAGTTCAAATACATTAAAAATCACAGGTACACCAAGGAAGGATCAAAAAAAGAACCAAT GCTCAATCTCACCTCAAATCAGGGTGTGAGTTATATATTCGAGTTTGACAGTTATGAAGATCTCAACATTTGTAGGGAATTTCTGGTTTTATGCGTCGTG GCAGGAAGAGCGCTTTCAAATCCAACAGAGACTCCAATTGTTAAAGCCGATTCACAAGTTCCTTTAAACCAACCCGGTACAGATGAATTGCTTTCCCGTG TGAGACTGCTGCAGGAGAATAGTGAGTTGCAAAAATTGCATAAACACTTTGTGGGTGATGGAGTGCTGACAGAAGCTGAATTTTGGGCTACGAGGAAGAA ATTGCTGGAGAGGGATTCCAACAGAAAGTCAAAACAACGAGTAGGCCTTAAAAGTTCCATGTTGGCTGAGGCAAAGCCATTAATCGACGGTCGAGTACAA TGCTTTATCCCTCACACTTATGGTCTTTTATGCTGTGATGTGCCTACAAACAGGGTTACATTTAATTTGACACCAGAGATAGTCCGTGAGATTTTTGCAG AAAAACCGGCAGTTCACCAGGCTTATTTGGACTACGTTCCCGGTAAGATGACAGACAAGGACTTCTGGACTAAATATTGTAGAGCAGAGTACCTCCAGCG GTCGAAGAACATTCAAGCTGCTTATGCAGAAGCAGCTGAAGACGAGGAGCTTGCTCTTTTCTTGAAGCCTGATGTCATTTTAGCCAATGAAACTCGTCAG AAGATCAGACGTGTTGATCCAACACTAGACATGGACGCTGACCTAGGTGATGATTATTCACATCTTCCTGGTCATGGGATTGCCCGCGATGGTGTCAAAG AATTACCGGAATCGGAACATGAAGTAGACAGAAGAGCTAGAACTTTACTGCAAGACCTTAACAGGCACGCATCTGTTGTTCTTGAGGGAGCTCCAATAGG CAAGTACGAAGAACAGTTTAAAGACACACAAACTGTAGCAGAGGCACTTAAAAGATCAAAACAAGAACATAGCACGGATAGTGGTGATAGGGGCAAGACG GCAGACCAAGAGAGATTAAAGAGGATGATATCCCAAGCAATGTCAATTGATGATCTTCAAGCATCAAATGATCACCATCTTGCGCCACTCTGCATCAAGG ATCCCAGAGATTATTTTGATTCACAACAAGGTGGCACATATAGAAATTCCAGAGACTCGACCGGTGGAATAAAGGGAAACTTGGGTAGCCAGGAAGCATA CTCTTCATTGAGGGACTCCATCTCTCGTATTATGTCTATGGGATTGAATGATCCCGTAGTTACATGCGAAGTAGCTCTTAAGGTTCTCTCTGTGCTGACC CATAACATCTCAAGCACAAAGTATAATGTGGGGAAGAATCCTGGTGAAAGTCTTTTGGACGGTCTTCCACCCCCAGTTAGGGAGGAGTTGCTACATCATT GGATTTCCATTGAAGAGTTGTTAAGGCATTTTTGGTCATCATATCCGTTAACGACCCAGTACCTTAATACCAAGGTAACCCGATTAAAGGATGCAATGTC AAAAATTGATTATCAGCTGCAGAAGTTGAAGGAAGCTGTGCAGCCAGATATCCGGCATCAAGTTACACTTCTTATCCGTCCAATGCAGCAGGCGCTAGAG GCAGCAATGCAGCATTATGATGCAGATCAGCAGAAGAGAACGTCAAGAAAACCAAATGGGTACAGTTGA
AA sequence Show only first row Show all	>Lus10020465 pacid=23139551 polypeptide=Lus10020465 locus=Lus10020465.g ID=Lus10020465.BGIv1.0 annot-version=v1.0 MSTTQVTKSVRYKTGVNKPGTPGRLSLINQRLVFRPKHPNSGSKLDMEFKYIKNHRYTKEGSKKEPMLNLTSNQGVSYIFEFDSYEDLNICREFLVLCVV AGRALSNPTETPIVKADSQVPLNQPGTDELLSRVRLLQENSELQKLHKHFVGDGVLTEAEFWATRKKLLERDSNRKSKQRVGLKSSMLAEAKPLIDGRVQ CFIPHTYGLLCCDVPTNRVTFNLTPEIVREIFAEKPAVHQAYLDYVPGKMTDKDFWTKYCRAEYLQRSKNIQAAYAEAAEDEELALFLKPDVILANETRQ KIRRVDPTLDMDADLGDDYSHLPGHGIARDGVKELPESEHEVDRRARTLLQDLNRHASVVLEGAPIGKYEEQFKDTQTVAEALKRSKQEHSTDSGDRGKT ADQERLKRMISQAMSIDDLQASNDHHLAPLCIKDPRDYFDSQQGGTYRNSRDSTGGIKGNLGSQEAYSSLRDSISRIMSMGLNDPVVTCEVALKVLSVLT HNISSTKYNVGKNPGESLLDGLPPPVREELLHHWISIEELLRHFWSSYPLTTQYLNTKVTRLKDAMSKIDYQLQKLKEAVQPDIRHQVTLLIRPMQQALE AAMQHYDADQQKRTSRKPNGYS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55750			BSD domain (BTF2-like transcri...		Lus10020465 [exp]	0	1
AT1G55750			BSD domain (BTF2-like transcri...		Lus10007089 [exp]	1.0	0.8959
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10022752 [exp]	1.7	0.8371
AT3G19780			unknown protein		Lus10040970 [exp]	2.4	0.8415
AT1G07910		ATRNL, RNL, AtR...	ARABIDOPSIS THALIANA RNA LIGAS...		Lus10017071 [exp]	8.5	0.8162
AT4G38120			ARM repeat superfamily protein...		Lus10033267 [exp]	9.8	0.7891
AT2G38670		PECT1	phosphorylethanolamine cytidyl...		Lus10017147 [exp]	12.3	0.7779
					Lus10004928 [exp]	13.1	0.7413
AT5G23080		TGH	TOUGH, SWAP (Suppressor-of-Whi...		Lus10000866 [exp]	13.4	0.8151
AT1G04140			Transducin family protein / WD...		Lus10022852 [exp]	13.6	0.8224
AT1G04140			Transducin family protein / WD...		Lus10000495 [exp]	15.3	0.8047

Compare expression of checked genes

Lus10020465 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.