Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64460 434 / 2e-155 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8) AT1G58280 357 / 3e-124 Phosphoglycerate mutase family protein (.1.2.3.4) AT2G17280 353 / 1e-123 Phosphoglycerate mutase family protein (.1.2) AT1G09935 248 / 1e-82 Phosphoglycerate mutase family protein (.1) AT1G09932 204 / 7e-65 Phosphoglycerate mutase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007093 [exp] 535 / 0 AT5G64460 422 / 8e-151 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8) Lus10032819 [exp] 360 / 6e-126 AT5G64460 386 / 2e-136 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8) Lus10032821 [exp] 305 / 3e-104 AT1G58280 320 / 4e-110 Phosphoglycerate mutase family protein (.1.2.3.4) Lus10032820 [exp] 242 / 3e-80 AT2G17280 233 / 7e-77 Phosphoglycerate mutase family protein (.1.2) Lus10001381 [exp] 72 / 1e-15 AT2G17280 74 / 3e-17 Phosphoglycerate mutase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G080300 [exp] 437 / 2e-156 AT5G64460 449 / 5e-161 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8) Potri.001G286000 [exp] 429 / 2e-153 AT5G64460 438 / 9e-157 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8) Potri.002G108500 [exp] 381 / 2e-133 AT5G64460 412 / 2e-145 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8) Potri.002G108600 [exp] 293 / 3e-100 AT5G64460 298 / 3e-102 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [flax] [poplar] His_phosphatase PF00300 [flax] [poplar] His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence Show only first row Show all	>Lus10020467 pacid=23139595 polypeptide=Lus10020467 locus=Lus10020467.g ID=Lus10020467.BGIv1.0 annot-version=v1.0 ATGGACGGTCCAGGCTTGTTCCCGGCACATCGGTGCAAGACCATTCATTTGGTTGGTATTCTGATCTTACTTTCCAGCAATCTACTTCCTACAATGTCGG TCAGGCATGCCCAGGGTGTACACAATGTGGAGGGAGATAAGAACTACAAAGCATACATGTCCCCCCAGTACTTTGACGCGGAGCTCACTCCATTGGGATG GGAACAAGTTGATAATTTGCGTAAACATGTACTTGAATCTCATCTATTGGACAGGGTTGAGCTGGTCATTACATCCCCTTTGATGAGGACATTACAAACA GCTGTTGGAGTTTTTGGTGGTGGCAGCTACACAGACAGGGTAGATGGGTTACCTCTTATGGTGGCAAATGCTGGAAACAGTGGTCGTGCTGCTATTTCTA GTTCCAATCCTCCTCCGATCGTTGCAGCTGAACTATGTCGTGAACATTTTGGTGTGCATCCTTGCGATCAGAGGAGAAGCGTCAGTGACTATCAATTTCT CTTTCCTGCAATTGATTTTTCACTAATTGAAACAGATGAGGATACAGTGTGGAAAGCTGACGTGAGAGAGACAACTGAAGAACTTGCAGCCAGAGGGCTA AAGTTCTTGAATTGGTTATGGACAAGAAGTGAGAAGGAGATTGCAATAGTTACCCACAGTGGATTTTTGTTCCATACTATGAACACGTTTGGAAATGACT GCCACCCGTTGGTGAAAAAGGAAATCTGCAAGCGCTTTTCAAATTGCGAATTGCGTTCGATGGTCATCGTCGACAGAAGTATGATGGGATCAGATACCTC AACAGCCGACTATCCTGGAAAGATTCCTAATGGCCCTGATCTCCCTAGCGAGTAG
AA sequence Show only first row Show all	>Lus10020467 pacid=23139595 polypeptide=Lus10020467 locus=Lus10020467.g ID=Lus10020467.BGIv1.0 annot-version=v1.0 MDGPGLFPAHRCKTIHLVGILILLSSNLLPTMSVRHAQGVHNVEGDKNYKAYMSPQYFDAELTPLGWEQVDNLRKHVLESHLLDRVELVITSPLMRTLQT AVGVFGGGSYTDRVDGLPLMVANAGNSGRAAISSSNPPPIVAAELCREHFGVHPCDQRRSVSDYQFLFPAIDFSLIETDEDTVWKADVRETTEELAARGL KFLNWLWTRSEKEIAIVTHSGFLFHTMNTFGNDCHPLVKKEICKRFSNCELRSMVIVDRSMMGSDTSTADYPGKIPNGPDLPSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64460			Phosphoglycerate mutase family...		Lus10020467 [exp]	0	1
AT3G15580		APG8H, ATG8I	AUTOPHAGY 8I, AUTOPHAGY 8H, Ub...		Lus10038046 [exp]	2.4	0.8000
AT4G29070			Phospholipase A2 family protei...		Lus10030011 [exp]	6.0	0.7576
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Lus10041561 [exp]	8.9	0.7707
AT3G11620		BAS1	alpha/beta-Hydrolases superfam...		Lus10016976 [exp]	9.2	0.7562
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Lus10001258 [exp]	10.1	0.7758
AT1G60670			Protein of unknown function (D...		Lus10013072 [exp]	14.1	0.7814
AT1G29530			unknown protein		Lus10015254 [exp]	16.1	0.7537
AT2G34450			HMG-box (high mobility group) ...		Lus10025391 [exp]	16.9	0.7433
AT2G17350			unknown protein		Lus10022984 [exp]	17.5	0.7440
AT4G13200			unknown protein		Lus10022803 [exp]	20.8	0.7479

Compare expression of checked genes

Lus10020467 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.