Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65630 171 / 2e-48 GTE7 global transcription factor group E7 (.1) AT5G10550 158 / 3e-43 GTE2 global transcription factor group E2 (.1) AT1G73150 154 / 7e-43 GTE3 global transcription factor group E3 (.1) AT1G17790 148 / 1e-40 DNA-binding bromodomain-containing protein (.1) AT5G14270 123 / 4e-31 ATBET9 bromodomain and extraterminal domain protein 9 (.1.2) AT1G06230 120 / 5e-30 GTE4 global transcription factor group E4 (.1.2.3) AT5G63320 118 / 9e-30 NPX1 nuclear protein X1 (.1.2.3) AT3G27260 113 / 2e-27 GTE8 global transcription factor group E8 (.1.2) AT3G01770 105 / 4e-25 ATBET10 bromodomain and extraterminal domain protein 10 (.1) AT5G46550 99 / 9e-23 DNA-binding bromodomain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007096 [exp] 540 / 0 AT1G06230 213 / 1e-62 global transcription factor group E4 (.1.2.3) Lus10034067 [exp] 510 / 5e-180 AT1G06230 304 / 7e-95 global transcription factor group E4 (.1.2.3) Lus10010524 [exp] 293 / 2e-99 AT5G65630 110 / 1e-27 global transcription factor group E7 (.1) Lus10039630 [exp] 140 / 3e-37 AT5G65630 191 / 5e-54 global transcription factor group E7 (.1) Lus10033624 [exp] 136 / 2e-35 AT1G06230 494 / 2e-163 global transcription factor group E4 (.1.2.3) Lus10017661 [exp] 136 / 2e-35 AT1G06230 499 / 3e-165 global transcription factor group E4 (.1.2.3) Lus10033623 [exp] 136 / 2e-35 AT1G06230 493 / 9e-164 global transcription factor group E4 (.1.2.3) Lus10032076 [exp] 122 / 1e-30 AT3G27260 450 / 6e-147 global transcription factor group E8 (.1.2) Lus10014609 [exp] 121 / 3e-30 AT3G27260 458 / 2e-150 global transcription factor group E8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G285700 [exp] 283 / 1e-91 AT1G73150 214 / 4e-63 global transcription factor group E3 (.1) Potri.009G080000 [exp] 274 / 6e-88 AT5G65630 180 / 1e-49 global transcription factor group E7 (.1) Potri.011G096400 [exp] 142 / 2e-38 AT1G06230 243 / 5e-72 global transcription factor group E4 (.1.2.3) Potri.013G118900 [exp] 135 / 4e-35 AT1G06230 463 / 5e-153 global transcription factor group E4 (.1.2.3) Potri.019G090700 [exp] 133 / 2e-34 AT1G06230 443 / 2e-145 global transcription factor group E4 (.1.2.3) Potri.015G091800 [exp] 132 / 5e-34 AT5G63320 521 / 6e-171 nuclear protein X1 (.1.2.3) Potri.001G376400 [exp] 125 / 1e-32 AT1G06230 267 / 4e-82 global transcription factor group E4 (.1.2.3) Potri.001G335000 [exp] 125 / 8e-32 AT3G27260 460 / 5e-151 global transcription factor group E8 (.1.2) Potri.012G094300 [exp] 124 / 2e-31 AT5G63320 513 / 9e-168 nuclear protein X1 (.1.2.3) Potri.001G355300 [exp] 110 / 1e-26 AT5G46550 201 / 5e-58 DNA-binding bromodomain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [flax] [poplar] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Lus10020470 pacid=23139518 polypeptide=Lus10020470 locus=Lus10020470.g ID=Lus10020470.BGIv1.0 annot-version=v1.0 ATGGGCAAATACCCCTTCTCGAACTCCAACCCTAGCAACCCTAACCCTCAATTCTCTAAGAAACGGCACCTTCAGGCGTTGCCTTTCGCCGATGTAGATG AATCTGCGGCATCTGACGACGCGTCATCAATTAATCGGAGACCTAACGATTTCATCACTGGGCGATACGTCACCTTCAATGTCGGTTCGTATTCAAAGAA GGAGATTGTGGACCTGAAGGATCGTCTGGTTGCCGAGCTTGAGCAGATCCGACAATTGGAGAGCCGTATCAATTCCTCGTCCGACTTCCAGATCAGATCC GGCTCAAATTTTCACAACAAGAAACCAATTGGTGGTCCGAACAGCAACAAGAAGATACTGGGAAACAAGCGGCCGTTCCCTGCTACGAATTCGAGTTTTG GGGTTCAGGAATTGAAGAGATCATATAACCATCAAGATATCTCGCAATTGATGAAGAAGTGCAGTCAGATCTTGTCCAAATTAATGAAGCATAAGTACGG GCACATCTTCAACGTGCCTGTAGACATCGTTGGATTCCAGCTTCACGATTATAACGACATAATCAAACAGCCGATGGATTTGGGTACTGTGAGGAAGAAA TTGGGGAAGAATCTCTACATTTCGCCTCTGGATTTTGCTGCAGACGTGAGATTGACCTTCAATAATGCCATGCGGTACAATCCCAAAGGTCACGAGGTTT ACGCAATTGCAGAGGATTTTCTCTCTAGATTTGAAGGTCTGTTCCAACCTATCAAGGATATGCTGGGTGATGAGGAGATCCACGAAGAAGAAGAGTTCGA GCTCGCTCAAGAAGTACAGGACAGTTCTTGGGATCATCATAACCATCACATGGGAATGATTGAGACTGAAAGGGTAGTACCACCGAAAGAGCAAGGGGAA ATGGTGCAAGTTATGGCGAAATCCGAGCAAATTGGTACAAACTCGATTCCACCACCACCTACTTCTGCATCGTGGTTCAAATAA
AA sequence Show only first row Show all	>Lus10020470 pacid=23139518 polypeptide=Lus10020470 locus=Lus10020470.g ID=Lus10020470.BGIv1.0 annot-version=v1.0 MGKYPFSNSNPSNPNPQFSKKRHLQALPFADVDESAASDDASSINRRPNDFITGRYVTFNVGSYSKKEIVDLKDRLVAELEQIRQLESRINSSSDFQIRS GSNFHNKKPIGGPNSNKKILGNKRPFPATNSSFGVQELKRSYNHQDISQLMKKCSQILSKLMKHKYGHIFNVPVDIVGFQLHDYNDIIKQPMDLGTVRKK LGKNLYISPLDFAADVRLTFNNAMRYNPKGHEVYAIAEDFLSRFEGLFQPIKDMLGDEEIHEEEEFELAQEVQDSSWDHHNHHMGMIETERVVPPKEQGE MVQVMAKSEQIGTNSIPPPPTSASWFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65630		GTE7	global transcription factor gr...		Lus10020470 [exp]	0	1
AT5G65630		GTE7	global transcription factor gr...		Lus10010524 [exp]	2.0	0.8487
AT1G08660		MGP2	MALE GAMETOPHYTE DEFECTIVE 2 (...		Lus10035162 [exp]	2.4	0.8543
AT4G30020			PA-domain containing subtilase...		Lus10006973 [exp]	2.8	0.8645
AT1G06230		GTE4	global transcription factor gr...		Lus10034067 [exp]	4.5	0.8431
AT1G13860		QUL1	QUASIMODO2 LIKE 1 (.1.2.3.4)		Lus10037101 [exp]	4.7	0.8873
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10041808 [exp]	10.4	0.8351
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10001013 [exp]	14.0	0.8224
AT1G47380			Protein phosphatase 2C family ...		Lus10021737 [exp]	20.0	0.7928
AT4G35335			Nucleotide-sugar transporter f...		Lus10013845 [exp]	22.4	0.8203
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Lus10023103 [exp]	22.6	0.8393

Compare expression of checked genes

Lus10020470 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.