Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04305 611 / 0 Magnesium transporter CorA-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007098 [exp] 890 / 0 AT2G04305 645 / 0.0 Magnesium transporter CorA-like family protein (.1) Lus10035643 [exp] 665 / 0 AT2G04305 606 / 0.0 Magnesium transporter CorA-like family protein (.1) Lus10010751 [exp] 391 / 4e-136 AT2G04305 393 / 3e-137 Magnesium transporter CorA-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G079600 [exp] 651 / 0 AT2G04305 587 / 0.0 Magnesium transporter CorA-like family protein (.1) Potri.001G285300 [exp] 645 / 0 AT2G04305 590 / 0.0 Magnesium transporter CorA-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01544 [flax] [poplar] CorA CorA-like Mg2+ transporter protein
Representative CDS sequence Show only first row Show all	>Lus10020472 pacid=23139524 polypeptide=Lus10020472 locus=Lus10020472.g ID=Lus10020472.BGIv1.0 annot-version=v1.0 ATGGAGATTTCCGCGGAAGAACCCCTTACCAATGGGGAGGCAGTGGAAATTGACAGAGAACCCACTGATGACATAATGCTTAATGAAATCCATCCCCCTA GAGCTCGTCTACCTGGCATGGTGAGACAGAAAGCTTATATCTTTGACGGCTGTGGGAATTACTTCAATAAAGAATGGGATCTGACTGAAGGTACAGGCCA AGAGTTTTGTTGGTACCATGTTGAACTCCCAAGGAGCAATCAGAAGCTAACATCATCTGCACAATGGCTCATTGATCTTCTATGCCCTCCGCTGAAACTG CAAGACATTTTGGCACTTGTCAGCAACGGTCCCTTCTGTGGTTATGTTGATGGGACGCTTGTGTTCAGAGTTAATTCTCCTGGCCCTCCCTCGAGCAACT TCACATTCCGATTGGCAGCTAGAGTTACTGAAAATTCAGTTATTACTGTCTCGTTAGGTCACATTCCTAGGGTAGGATTCTCACCAACCAGTCAATCTCT TCTTTCAGATATTCCTAGCGTGGAATCTCCGTACCGTAGTGGGACGAATAAGGAAGCCGGTGGAACTGTGATTAAGGAACATGTTCTTGAGTTCCTTTTG ACAATGAACCATTCTGAGGAGGCTGATAATCCTGTGCCGAAAAGGGTGTCGAATCTGGTAGTTCATATCCTTGATACTCATGTCGATCATCTTCAAGATA CTGTTACTAAACTTGAGATGGAGTTGGAATCTGTGGAGCATGACCTTGATCAAGGCGGTTTGGCTTTGAAGAAGAAAATGCTAGACGATAGAAGATTCCC CAAAATGCATCTTAATCTGCAAAGGCTGCTCCAGGCGATAGCACACGAGGAACAAGTACTTCCTCGAGTGAAAGAAAAGTGTTCAACAAAAGGATGGTTT GCCAGCGAAGACATAAATGCCTTGGAAGAGTTGATTGGCAGTCTGAGGAGACTAAAAGAGAATGTAGGATTCTTAGCGAATCGCGTCACAGCTATTCAGG CCGGTCTTGATAGTTGGCAAGCTGAACAAATCAATCGGAAACTTTACTATCTCTCATTCCTTTCCATAGTATTCCTGCCGCTGTCAATCATTACTGGAGT ATTTGGGATGAATGTTGGAGGAGTGCCATGGACAGGTCAAGATGATCCGGAGCTTAGCGATGGTTTCCAGAACGTGATGCTTTTGTGTCTGGGAATGCTT GTACTTGTACTGCTATGCTTCATCTTCCCGTCTGCTTACACATCTTTCGATTCTTGGATTCGAAGAATAGCCATGAAAGGTAGTTGGACGATCAACATGC GATCGTTTCTGAAGAGAACTGTCAGAGGCCAAGAAAGAGGAGGTTACCTGCGCATTTGA
AA sequence Show only first row Show all	>Lus10020472 pacid=23139524 polypeptide=Lus10020472 locus=Lus10020472.g ID=Lus10020472.BGIv1.0 annot-version=v1.0 MEISAEEPLTNGEAVEIDREPTDDIMLNEIHPPRARLPGMVRQKAYIFDGCGNYFNKEWDLTEGTGQEFCWYHVELPRSNQKLTSSAQWLIDLLCPPLKL QDILALVSNGPFCGYVDGTLVFRVNSPGPPSSNFTFRLAARVTENSVITVSLGHIPRVGFSPTSQSLLSDIPSVESPYRSGTNKEAGGTVIKEHVLEFLL TMNHSEEADNPVPKRVSNLVVHILDTHVDHLQDTVTKLEMELESVEHDLDQGGLALKKKMLDDRRFPKMHLNLQRLLQAIAHEEQVLPRVKEKCSTKGWF ASEDINALEELIGSLRRLKENVGFLANRVTAIQAGLDSWQAEQINRKLYYLSFLSIVFLPLSIITGVFGMNVGGVPWTGQDDPELSDGFQNVMLLCLGML VLVLLCFIFPSAYTSFDSWIRRIAMKGSWTINMRSFLKRTVRGQERGGYLRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04305			Magnesium transporter CorA-lik...		Lus10020472 [exp]	0	1
AT2G04305			Magnesium transporter CorA-lik...		Lus10007098 [exp]	1.0	0.9163
AT3G51000			alpha/beta-Hydrolases superfam...		Lus10041790 [exp]	4.9	0.8920
AT3G03560			unknown protein		Lus10005694 [exp]	14.5	0.8399
AT4G08690			Sec14p-like phosphatidylinosit...		Lus10020911 [exp]	21.5	0.8536
AT3G53210			nodulin MtN21 /EamA-like trans...		Lus10028351 [exp]	24.0	0.8711
AT5G57700			BNR/Asp-box repeat family prot...		Lus10008903 [exp]	29.2	0.8807
AT5G23520			smr (Small MutS Related) domai...		Lus10004296 [exp]	30.0	0.8369
AT5G41650			Lactoylglutathione lyase / gly...		Lus10032333 [exp]	35.3	0.8414
AT3G12100			Cation efflux family protein (...		Lus10004168 [exp]	37.8	0.8491
AT3G54380		AtSAC3C	yeast Sac3 homolog C, SAC3/GAN...		Lus10041609 [exp]	38.5	0.8607

Compare expression of checked genes

Lus10020472 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.