Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09580 414 / 2e-144 unknown protein AT1G53345 179 / 2e-53 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007099 [exp] 441 / 1e-153 AT5G09580 253 / 6e-80 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G285000 [exp] 442 / 9e-156 AT5G09580 412 / 1e-143 unknown protein Potri.015G030300 [exp] 190 / 1e-57 AT1G53345 433 / 4e-153 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020476 pacid=23139525 polypeptide=Lus10020476 locus=Lus10020476.g ID=Lus10020476.BGIv1.0 annot-version=v1.0 ATGGCTACCCCGCTTCTCCGCACTAAACTGAACCTGGTACCCTTTTGTTTCTCGCCGGGCGGACCTCGAGGATTCCGATCAGACGCTGCTCTGGAGGCTC TGGCTAAGGCAAGAGAAGACGGCATCCGCAATCTCATCCTTTACAATTATCCATCTTTCTCAGGAGCTTTCTCGGCTTTGTTCGCTCACCTCTTCCACTC TCGCCTCCGCCTCCCTTTCCTCGTCTTGCCTTTCTCCGCCGCTGTTCCTCTCAGGGTTGAAGATTTATGCATAGAAGGGCTCCAGCAATGCTATCTGCTT GATTTCATTGGCTCACGCGGATTCGCTGCTCGCATTGCGCGGCAGTCAATGTGCGAAGTGATTGCTTTTGATCACCGGAAGCCAACACTTGCACGAGTTC CTTCTCTGGAAGATAATCAAGAGAAAGTTAGATACCATGTTGATCTTGAGAGGAGCAGCTCCAGAGCAGCGTACAACTATTTTGCAGACAGGCTTGCCGG AGAGTGTAAATTGTCTCATGAAGGTGTTTGGAGATTATTGAACCCGGAAGACCAAGGTCGTGTTGAGGCTGTTTTGAGCTATATTGAAGATAGTGATCTT CAACGATGGTGCTTACCGGACTTTAAAGCTTTTAGAATGGGTATCAGTGAATGGAGGCAGAGGATCAATTGCATCACTAATCCCTACATATTTGAAGAGT TGTTAGAGATGAGCTCTGCTGATATAATTGCGAAAGGGAATTCACATATTTCGTTTCAGCGAGATGCTGCCAAAAAGCTGCTGAATAAGGTTTACAAAGT ACGACTCGGCAGAGGATTTTATGGGGAATGCCTGGGAGTCAGAGTTGATGGAAATGCTAAGTTGAGTGGACTGCTTGGCAAGGAACTTAGTGTTAGAAGT GCTGCAGCTGGACTAAGGCCGATTGGAGCAGTCATCTACATGCACAGGAACAATCTTAAGATGTGCTTAAGGAGCATTGATGCTTCTACTGATACCTCTG AGGTTGCAAAGGCATACGGTGGAGGTGGTACACCTAGTTCCAGTTCCTTCATGATAAGGATGGACGAGTACAATCAGTGGCTGTCAACCGATTTTCCATA A
AA sequence Show only first row Show all	>Lus10020476 pacid=23139525 polypeptide=Lus10020476 locus=Lus10020476.g ID=Lus10020476.BGIv1.0 annot-version=v1.0 MATPLLRTKLNLVPFCFSPGGPRGFRSDAALEALAKAREDGIRNLILYNYPSFSGAFSALFAHLFHSRLRLPFLVLPFSAAVPLRVEDLCIEGLQQCYLL DFIGSRGFAARIARQSMCEVIAFDHRKPTLARVPSLEDNQEKVRYHVDLERSSSRAAYNYFADRLAGECKLSHEGVWRLLNPEDQGRVEAVLSYIEDSDL QRWCLPDFKAFRMGISEWRQRINCITNPYIFEELLEMSSADIIAKGNSHISFQRDAAKKLLNKVYKVRLGRGFYGECLGVRVDGNAKLSGLLGKELSVRS AAAGLRPIGAVIYMHRNNLKMCLRSIDASTDTSEVAKAYGGGGTPSSSSFMIRMDEYNQWLSTDFP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09580			unknown protein		Lus10020476 [exp]	0	1
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10020893 [exp]	13.5	0.7754
AT5G02250		ATMTRNASEII, RN...	ribonucleotide reductase 1, EM...		Lus10024387 [exp]	17.4	0.7690
AT1G27070			5'-AMP-activated protein kinas...		Lus10030802 [exp]	19.7	0.6885
AT1G73400			Pentatricopeptide repeat (PPR)...		Lus10019141 [exp]	22.4	0.7312
AT3G58560			DNAse I-like superfamily prote...		Lus10012293 [exp]	27.4	0.7509
AT1G04080		PRP39	Tetratricopeptide repeat (TPR)...		Lus10022874 [exp]	27.4	0.7471
AT4G21660			proline-rich spliceosome-assoc...		Lus10018475 [exp]	30.6	0.7486
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10000040 [exp]	32.0	0.7395
AT5G46400		ATPRP39-2 ,AT P...	Tetratricopeptide repeat (TPR)...		Lus10025377 [exp]	37.0	0.7368
AT1G19485			Transducin/WD40 repeat-like su...		Lus10018573 [exp]	40.2	0.7186

Compare expression of checked genes

Lus10020476 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.