Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31220 226 / 1e-69 bHLH bHLH010 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G31210 217 / 2e-66 bHLH bHLH091 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G06170 201 / 8e-61 bHLH bHLH149 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G31215 72 / 4e-15 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G16910 66 / 2e-11 bHLH AMS, bHLH021 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46510 65 / 2e-11 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT2G28160 62 / 2e-10 bHLH ATFIT1, ATBHLH29, bHLH029, FIT1, ATBHLH029, FRU ARABIDOPSIS FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, BASIC HELIX-LOOP-HELIX PROTEIN 29, FER-like regulator of iron uptake (.1) AT5G57150 60 / 3e-10 bHLH bHLH035 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT1G12860 61 / 4e-10 bHLH SCRM2, ICE2, bHLH033 SCREAM 2, INDUCER OF CBF EXPRESSION 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G26744 60 / 1e-09 bHLH SCRM, ATICE1, ICE1, bHLH116 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007101 [exp] 541 / 0 AT2G31220 268 / 8e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10004575 [exp] 62 / 2e-10 AT4G17880 445 / 9e-152 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10006951 [exp] 61 / 2e-10 AT5G57150 243 / 2e-81 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10000037 [exp] 61 / 2e-10 AT4G17880 300 / 3e-99 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10042572 [exp] 60 / 2e-10 AT4G09820 156 / 1e-45 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10004574 [exp] 62 / 3e-10 AT1G32640 618 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10000484 [exp] 62 / 3e-10 AT4G17880 562 / 0.0 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10005999 [exp] 61 / 5e-10 AT1G32640 268 / 3e-85 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030970 [exp] 61 / 9e-10 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G068500 [exp] 276 / 8e-89 AT2G31220 253 / 7e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G202100 [exp] 269 / 3e-86 AT2G31220 252 / 8e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G023800 [exp] 127 / 2e-34 AT1G06170 125 / 2e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.003G147300 [exp] 64 / 5e-11 AT4G00870 209 / 1e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.015G105200 [exp] 64 / 6e-11 AT3G26744 323 / 1e-104 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Potri.009G136300 [exp] 64 / 6e-11 AT2G16910 461 / 1e-156 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G106000 [exp] 64 / 7e-11 AT3G26744 339 / 9e-111 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Potri.002G176900 [exp] 62 / 2e-10 AT4G17880 277 / 2e-86 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.018G141800 [exp] 60 / 5e-10 AT5G57150 256 / 6e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.014G099700 [exp] 61 / 6e-10 AT1G01260 556 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10020478 pacid=23139559 polypeptide=Lus10020478 locus=Lus10020478.g ID=Lus10020478.BGIv1.0 annot-version=v1.0 ATGCTTAACGATCCTCCACCACTGCCGCCTCCTTACCCTCCCTCCACTCCCGATCTCAACCTCTTCAACTTGCCTATGTCCTCTCTCCTTCCCAATTCCT CAATCTCATTCGCCAACAACAACCCCAAACCTCTCATGGGCGGCGGCGGAGGAGGAGGAGGATACGGCGGCTGGGACCTTCCGATTTCCGACGGAGCTCA GTCGGCTTCTTCCGTACACTACGACCCGCTATCCTACCTCAACCTCCCGCCTCAGCCGCCTCTGTTCAGGGAGCTCTTCCAGTATCTCCCCTCCCACGGC GGCGGTAATTCTCTGCTCGGCGGCGGAGGACTCGTTGATATCCACGGAGGCGAAGGAAGCAGCGGAGGAGGTGGTGGGATTTATCCCGACGGAGACGGCT CGTCGTCTCAACAGCTTGACAGTAGCGTCCTGGAGTTCAATTGGGACATGGCTTGTCTCGCCAAAGGCAGAGCAGCTGGAAGAATGGCTAAACCCTTGAC CACCGAGCGGCAGAGGAGACAGCAGGTCAACGATAAATTCTCGGCTCTCAGAAGCCTCATCCCCAATCCTACTAAGAACGATAAAGCGTCGGTGGTGGGA GACGCGATAGGGTACATCAAGGAGCTGTTGGGGACAGTGGAGGAGCTGAAATTGCTGGTGGAGAAGAAGAGGTGCAGTAGATGGAGGAGCAAGAGAAACA AGACTGATCATCAACAAGGCGGCGAAATCGATGCCATGAATGAGGGTTCCGAGATGAAAGCGGCGAATTCAAACGGCAGCGGAGGACACGGTACGGATCA GCTGGACAAATCGTGTAACGGATCGACACTGAGGAGCTCCTGGCTGCAGAGGAAGTCCAAGGATACCGAGATTGATGTGAGGATTATCGAGGATGAGGTG ACGATCAAATTGGTTCAGAGGAAGAAGATCAATTGCTTGTTGTTTGTTTCCAAGGTTCTTGATGAGCTGCATTTGGATCTTCATCATGTTGCTGGAGGCC ACGTTGGTGACTATTACAGCTTTCTCTTCAATACCAAGATATGTGAAGGTTCTTCAGTGTATGCTAGCGCCATAGCCAACAAGCTGATTGAGGTTGTGGA CAAACAGTATGCTTCTACCCCATCAATCAGCTGCTACTGA
AA sequence Show only first row Show all	>Lus10020478 pacid=23139559 polypeptide=Lus10020478 locus=Lus10020478.g ID=Lus10020478.BGIv1.0 annot-version=v1.0 MLNDPPPLPPPYPPSTPDLNLFNLPMSSLLPNSSISFANNNPKPLMGGGGGGGGYGGWDLPISDGAQSASSVHYDPLSYLNLPPQPPLFRELFQYLPSHG GGNSLLGGGGLVDIHGGEGSSGGGGGIYPDGDGSSSQQLDSSVLEFNWDMACLAKGRAAGRMAKPLTTERQRRQQVNDKFSALRSLIPNPTKNDKASVVG DAIGYIKELLGTVEELKLLVEKKRCSRWRSKRNKTDHQQGGEIDAMNEGSEMKAANSNGSGGHGTDQLDKSCNGSTLRSSWLQRKSKDTEIDVRIIEDEV TIKLVQRKKINCLLFVSKVLDELHLDLHHVAGGHVGDYYSFLFNTKICEGSSVYASAIANKLIEVVDKQYASTPSISCY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31220	bHLH	bHLH010	basic helix-loop-helix (bHLH) ...		Lus10020478 [exp]	0	1
AT3G06240			F-box family protein (.1)		Lus10026587 [exp]	8.8	0.7422
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Lus10035433 [exp]	20.7	0.7554
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10040284 [exp]	22.2	0.7624
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10037295 [exp]	44.7	0.7301
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10003093 [exp]	46.1	0.7157
AT3G46850			Subtilase family protein (.1)		Lus10016482 [exp]	49.8	0.7015
AT5G03670			unknown protein		Lus10023875 [exp]	53.7	0.7112
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10015285 [exp]	63.6	0.7005
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10038670 [exp]	80.2	0.7111
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10030577 [exp]	80.2	0.6639

Compare expression of checked genes

Lus10020478 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.