Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04850 260 / 6e-82 ATKEA3, KEA3 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) AT1G01790 74 / 9e-15 ATKEA1, KEA1 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) AT4G00630 67 / 1e-12 ATKEA2, KEA2 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007104 [exp] 370 / 2e-125 AT4G04850 936 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Lus10009829 [exp] 71 / 3e-14 AT4G00630 372 / 3e-121 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10017823 [exp] 72 / 5e-14 AT1G01790 660 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Lus10040938 [exp] 69 / 4e-13 AT4G00630 928 / 0.0 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10018844 [exp] 65 / 1e-11 AT4G00630 1352 / 0.0 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G080800 [exp] 268 / 2e-84 AT4G04850 841 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Potri.002G157200 [exp] 74 / 6e-15 AT1G01790 1343 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Potri.014G080800 [exp] 72 / 3e-14 AT1G01790 1300 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02254 [flax] [poplar] TrkA_N TrkA-N domain
Representative CDS sequence Show only first row Show all	>Lus10020484 pacid=23139600 polypeptide=Lus10020484 locus=Lus10020484.g ID=Lus10020484.BGIv1.0 annot-version=v1.0 ATGCCGAATCCTAATCCTAATAATTCACGGATTCTTCGGCAATATGGTTTGTCTTTGTTTCTCGCTGATGCGACACTTTTCAGTGCATCTAAAGTTTCAT GCTTTCAGCCACAAAAAGTGGCAGAGCAAGTCAACTTTGAAGGCAGTGAACCTGTTGTCATCCTTGGATTTGGACAGATGGGCCAGGTGTTAGCAAACTT CTTGTCCACTCCGTTTACTTCAGGAGTGGATGGTGACGCAGCGGTGGGAATGCCTTTCATAGCTTTCGATCTGAACCCATCCGTGGTACAGGCATCTCGA AAACTTGGTTTCCCAATTCTTTATGGGGATGGATCACGCCCTGAAGTACTCCGAACGGCTGGCTTCTCTTCACCTAAAGCTGTCATAGTTACTTACACTG GAAAGAAAAGGACACTCGAGGCCGTACAGAGGCTTCGACTTGCATTTCCTGGGATTCCTATATATGCTAGAGCTCAGAACATTATGCATCTTTTGGATCT GAAGAAAGCTGGTGCTACAGATGCCATTCTAGAGAATGCGGAGACAAGTTTACAACTCGGGTCGAAGCTCTTGAAAGGGCTTGGAGTCATGTCTGATGAC GTAAACTTTTTAAGCCAACTGGTTCGAGACTCTATGGAGTTGCAAGCTCAAGAAGCACTGGATAAAACTGATGAATCAGACATGGCTATCTTGAAGCCAC TACAGGTACAGAGACAAAACATTGTGATTAAATTAAACTGA
AA sequence Show only first row Show all	>Lus10020484 pacid=23139600 polypeptide=Lus10020484 locus=Lus10020484.g ID=Lus10020484.BGIv1.0 annot-version=v1.0 MPNPNPNNSRILRQYGLSLFLADATLFSASKVSCFQPQKVAEQVNFEGSEPVVILGFGQMGQVLANFLSTPFTSGVDGDAAVGMPFIAFDLNPSVVQASR KLGFPILYGDGSRPEVLRTAGFSSPKAVIVTYTGKKRTLEAVQRLRLAFPGIPIYARAQNIMHLLDLKKAGATDAILENAETSLQLGSKLLKGLGVMSDD VNFLSQLVRDSMELQAQEALDKTDESDMAILKPLQVQRQNIVIKLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10020484 [exp]	0	1
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10020485 [exp]	1.4	0.9490
AT5G08740		NDC1	NAD(P)H dehydrogenase C1 (.1)		Lus10032131 [exp]	2.2	0.9152
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10007104 [exp]	2.4	0.9230
AT3G01550		ATPPT2	phosphoenolpyruvate (pep)/phos...		Lus10022257 [exp]	2.6	0.9059
AT5G64940		ATATH13, ATOSA1	A. THALIANA OXIDATIVE STRESS-R...		Lus10036636 [exp]	3.2	0.9459
AT1G44446		ATCAO, CH1	CHLOROPHYLL A OXYGENASE, Pheop...		Lus10000214 [exp]	9.4	0.9007
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10009846 [exp]	9.7	0.8248
AT5G64940		ATATH13, ATOSA1	A. THALIANA OXIDATIVE STRESS-R...		Lus10035853 [exp]	10.6	0.9170
AT3G06510		SFR2, ATSFR2	SENSITIVE TO FREEZING 2, Glyco...		Lus10011147 [exp]	11.0	0.9047
AT1G44446		ATCAO, CH1	CHLOROPHYLL A OXYGENASE, Pheop...		Lus10042718 [exp]	11.5	0.8966

Compare expression of checked genes

Lus10020484 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.