Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04850 531 / 0 ATKEA3, KEA3 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) AT4G00630 158 / 5e-41 ATKEA2, KEA2 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) AT1G01790 155 / 7e-40 ATKEA1, KEA1 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) AT5G51710 58 / 1e-08 ATKEA5, KEA5 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007104 [exp] 673 / 0 AT4G04850 936 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Lus10017823 [exp] 111 / 2e-25 AT1G01790 660 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Lus10018844 [exp] 111 / 2e-25 AT4G00630 1352 / 0.0 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10040938 [exp] 93 / 1e-19 AT4G00630 928 / 0.0 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10009830 [exp] 86 / 2e-17 AT4G00630 838 / 0.0 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10040549 [exp] 55 / 1e-07 AT2G19600 851 / 0.0 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) Lus10008002 [exp] 44 / 0.0003 AT2G19600 781 / 0.0 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G080800 [exp] 588 / 0 AT4G04850 841 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Potri.002G157200 [exp] 150 / 3e-38 AT1G01790 1343 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Potri.014G080800 [exp] 149 / 9e-38 AT1G01790 1300 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Potri.012G130500 [exp] 55 / 8e-08 AT5G51710 830 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Potri.015G132400 [exp] 54 / 2e-07 AT5G51710 791 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10020485 pacid=23139531 polypeptide=Lus10020485 locus=Lus10020485.g ID=Lus10020485.BGIv1.0 annot-version=v1.0 ATGTGTTCACTTACTGCTTTGCAGGGACAAGATGTTTTCCAACAAAGTAGCCCATTTAGGGGATGCTGTTTTCGGTTATCAGGTTTTCATGGATGTTCCT CTGGTACTTGGCATTCCAGAAAGCAAGCTCAATATATGAAGAAGGTGAATGCAGTTGAATGCAGGATAAGTCATTACTCTTTTACATATTCAACCAGAGT CCTCCAACACAACAAGACCGTCTTGACTACTACTTCAGCACCAACTAGAGGAGGAGGATTCTATCTTTTTAAACAAAAACTAAACCCCGGGGAGAGAACT CGTCTATATTCAACAAGTGAGCTTGCTGGTGCTGTAGAAGTTATCAATGATCTGGGATTGGATACATTGACTTTCTTGGCTGTTACTGTTGTTGTTGTCC CTGTGTTCAGGATCATTAAAGCTAGCCCAATACTTGGTTTCTTTTTTGCTGGGATTGTACTCAATCAGTTTGGCTTCATCAGAAATCTAACAGATGTTAA AGTTCTTTCAGAATGGGGAATTCTGTTCTTGCTGTTTGAAATGGGTTTAGAGCTCTCACTTGCACGACTTAAAGCCCTAGCAAAATTTGCCTTTGGCATG GGATTGACTCAGGTTGTTCTATCCACTCTTGCTTTCACAGCATTTGAGCTTCCACCTAATGGGGCTGTTGGAACAAAAATTCTGCAGTTCCTTTTTCACT CACGGGATGATTTGGTGAATATCAGAAGCATTGATGAGGCTATTGTTATTGGTGCAGCTCTCTCTCTGTCTTCTTCTGCCTTTGTTCTTCAGCTTCTTGC AGAAAAAGGTGAGCTGCCTACGAGGTTTGGTTCAGCAACTTTGGGGATACTTCTTTTACAGGATATAGCAGTAGTTCCTCTTTTAGTCATACTGCCTGTC CTAGAGAGCCAGAATCTGGTGGGGGAAAGTATATTGCCAACGCTTATTCAGGAAAGTTTGAAGGCCTTATTGGGATTGGGATTGCTATCTCTTGGTGGGA AATTCGGTCTAAGGCGAGTTTTTGAGGTTGTTGCAGAAGCAAGAAGCTCAGAGGCCTTTGTTGCTCTCTGCCTGCTAACAGTTGCTGGGACTTCTCTTAT TACCCAGAAGTTGGGCTTCAGCGACACGCTTGGTGCATTTTTAGCTGGGGCATTATTGGCAGAAACAAATTTCCGTACACAGATTGAAGCTGACATAAGA CCATTCAGGGGGTTGCTTCTTGGATTATTTTTTGTAACTACAGGAACTTCTGTGGACACGCAGCTGCTTTTACGAGAATGGCCAAATGTACTGTCACTCC TGGGGGGATTGATTGTCATCAAGACACTGATTATAACAGCTATAGGTCCTCGAGTTGGACTCACTTTGCAAGAGAGTGTAAGAATCGGGTTGCTGCTATC GCAGGGAGGAGAGTTTGCTTTTGTTGTCTTTTCTCTGGCTAACAGGCTTGGAGTTCTACCACTTGAGCTCAACAAGCTTCTTATCATCGTTGTCGTGTTG TCAATGGCATTAACCCCGTTTCTTAACGAACTTGGAAGAAGAGCTGCTCGGTTTATTGAAGACAAGTCTGATACAGAAGAAGTATGTCCCTAA
AA sequence Show only first row Show all	>Lus10020485 pacid=23139531 polypeptide=Lus10020485 locus=Lus10020485.g ID=Lus10020485.BGIv1.0 annot-version=v1.0 MCSLTALQGQDVFQQSSPFRGCCFRLSGFHGCSSGTWHSRKQAQYMKKVNAVECRISHYSFTYSTRVLQHNKTVLTTTSAPTRGGGFYLFKQKLNPGERT RLYSTSELAGAVEVINDLGLDTLTFLAVTVVVVPVFRIIKASPILGFFFAGIVLNQFGFIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGM GLTQVVLSTLAFTAFELPPNGAVGTKILQFLFHSRDDLVNIRSIDEAIVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPV LESQNLVGESILPTLIQESLKALLGLGLLSLGGKFGLRRVFEVVAEARSSEAFVALCLLTVAGTSLITQKLGFSDTLGAFLAGALLAETNFRTQIEADIR PFRGLLLGLFFVTTGTSVDTQLLLREWPNVLSLLGGLIVIKTLIITAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVL SMALTPFLNELGRRAARFIEDKSDTEEVCP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10020485 [exp]	0	1
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10007104 [exp]	1.0	0.9604
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10020484 [exp]	1.4	0.9490
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Lus10008040 [exp]	2.2	0.9158
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10019386 [exp]	2.8	0.9320
AT5G08740		NDC1	NAD(P)H dehydrogenase C1 (.1)		Lus10032131 [exp]	4.2	0.9097
AT4G25700		BCH1, B1, CHY1,...	BETA CAROTENOID HYDROXYLASE 1,...		Lus10027515 [exp]	4.6	0.8697
AT5G64940		ATATH13, ATOSA1	A. THALIANA OXIDATIVE STRESS-R...		Lus10036636 [exp]	5.2	0.9342
AT1G44446		ATCAO, CH1	CHLOROPHYLL A OXYGENASE, Pheop...		Lus10000218 [exp]	7.0	0.8970
AT3G21670			Major facilitator superfamily ...		Lus10030006 [exp]	7.1	0.8944
AT5G19210			P-loop containing nucleoside t...		Lus10034052 [exp]	8.2	0.8249

Compare expression of checked genes

Lus10020485 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.