Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04800 246 / 5e-84 ATMSRB3 methionine sulfoxide reductase B3 (.1) AT4G21860 245 / 5e-83 MSRB2 methionine sulfoxide reductase B 2 (.1.2.3) AT4G04830 230 / 5e-78 ATMSRB5 methionine sulfoxide reductase B5 (.1.2) AT4G04810 218 / 2e-73 ATMSRB4 methionine sulfoxide reductase B4 (.1) AT4G21840 213 / 3e-71 ATMSRB8 methionine sulfoxide reductase B8 (.1) AT4G21830 211 / 1e-70 ATMSRB7 methionine sulfoxide reductase B7 (.1.2) AT4G21850 208 / 3e-69 ATMSRB9 methionine sulfoxide reductase B9 (.1.2) AT4G04840 198 / 4e-65 ATMSRB6 methionine sulfoxide reductase B6 (.1) AT1G53670 110 / 3e-30 MSRB1, ATMSRB1 methionine sulfoxide reductase B 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007105 [exp] 351 / 1e-124 AT4G21860 251 / 2e-85 methionine sulfoxide reductase B 2 (.1.2.3) Lus10009574 [exp] 243 / 4e-83 AT4G04830 225 / 2e-77 methionine sulfoxide reductase B5 (.1.2) Lus10007106 [exp] 133 / 3e-37 AT5G09630 150 / 1e-41 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10013727 [exp] 110 / 5e-30 AT1G53670 253 / 2e-86 methionine sulfoxide reductase B 1 (.1.2) Lus10005593 [exp] 107 / 5e-29 AT1G53670 246 / 1e-83 methionine sulfoxide reductase B 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G080700 [exp] 264 / 3e-90 AT4G21860 253 / 7e-86 methionine sulfoxide reductase B 2 (.1.2.3) Potri.001G286500 [exp] 259 / 2e-88 AT4G21860 254 / 1e-86 methionine sulfoxide reductase B 2 (.1.2.3) Potri.008G198600 [exp] 224 / 5e-76 AT4G04830 221 / 1e-75 methionine sulfoxide reductase B5 (.1.2) Potri.011G114300 [exp] 100 / 4e-26 AT1G53670 231 / 7e-78 methionine sulfoxide reductase B 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0080 [flax] [poplar] Beta-tent PF01641 [flax] [poplar] SelR SelR domain
Representative CDS sequence Show only first row Show all	>Lus10020486 pacid=23139532 polypeptide=Lus10020486 locus=Lus10020486.g ID=Lus10020486.BGIv1.0 annot-version=v1.0 ATGCTCAAAACCTCTCCAATTGCATCCTCCGCCAACACCCTTCTCTTTCACTCAACCATTATTCCTACTAACCCTCCTCTTTACACCATCACCCATTCCA GGTCGTTGCAATCGCAATCCAACCCCGCTTCTCGATTCCTCTCCTTCTCCCCTTCTGCTAAGTCTTCGTCCTTCGTCTCCTCCAAGCGTAGCTTTCGTGC CAGTCGGATTGTAGCCATGTCGGCTCCCGGGTCGGTTCAGAAGTCTGATGAAGAGTGGCGCGCCGTCCTTTCGCCTGAGCAGTTCAGGATTCTGAGACAG AAAGGCACCGAGTATCCTGGTACTGGGCAGTACGACAAGTTCTACGAGGAGGGAGTCTACAGCTGTGCAGGATGCGGGACTCCTCTGTACACATCAACCA CAAAGTTCAATTCTGGCTGCGGCTGGCCTGCTTTCTTTGATGGTATTCCTGGAGCCATAAACCGCCATGCTGACCCAGATGGCCGGAGAATTGAGATAAC CTGTGCAGCTTGTGGAGGCCATCTGGGTCATGTGTTTAAAGGGGAAGGGTTTAAGACACCCACCGATGAACGACACTGTGTGAACAGCGTATCACTCAAG TTTGCCCCTGGCAATGCTTCCACTTGA
AA sequence Show only first row Show all	>Lus10020486 pacid=23139532 polypeptide=Lus10020486 locus=Lus10020486.g ID=Lus10020486.BGIv1.0 annot-version=v1.0 MLKTSPIASSANTLLFHSTIIPTNPPLYTITHSRSLQSQSNPASRFLSFSPSAKSSSFVSSKRSFRASRIVAMSAPGSVQKSDEEWRAVLSPEQFRILRQ KGTEYPGTGQYDKFYEEGVYSCAGCGTPLYTSTTKFNSGCGWPAFFDGIPGAINRHADPDGRRIEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSLK FAPGNAST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21860		MSRB2	methionine sulfoxide reductase...		Lus10020486 [exp]	0	1
AT3G61200			Thioesterase superfamily prote...		Lus10000809 [exp]	2.2	0.8897
AT3G03980			NAD(P)-binding Rossmann-fold s...		Lus10020265 [exp]	3.7	0.8857
AT1G70000	MYB		myb-like transcription factor ...		Lus10013289 [exp]	6.5	0.8322
AT2G43090			Aconitase/3-isopropylmalate de...		Lus10007804 [exp]	6.7	0.8765
AT1G17160			pfkB-like carbohydrate kinase ...		Lus10026199 [exp]	8.1	0.8627
AT1G07710			Ankyrin repeat family protein ...		Lus10024440 [exp]	9.2	0.8625
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10025885 [exp]	9.5	0.8591
AT4G34120		CBSX2, CDCP1, L...	LOSS OF THE TIMING OF ET AND J...		Lus10002834 [exp]	11.6	0.8667
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10040887 [exp]	11.8	0.8527
AT2G27260			Late embryogenesis abundant (L...		Lus10013329 [exp]	12.0	0.8625

Compare expression of checked genes

Lus10020486 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.