Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37880 317 / 5e-106 LisH/CRA/RING-U-box domains-containing protein (.1) AT2G22690 313 / 1e-104 zinc ion binding (.1.2) AT5G09630 304 / 7e-101 LisH/CRA/RING-U-box domains-containing protein (.1) AT3G55070 88 / 7e-19 LisH/CRA/RING-U-box domains-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019837 [exp] 299 / 2e-99 AT4G37880 399 / 9e-139 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10002832 [exp] 298 / 8e-99 AT4G37880 407 / 1e-141 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10014078 [exp] 294 / 2e-97 AT2G22690 382 / 2e-132 zinc ion binding (.1.2) Lus10027883 [exp] 294 / 4e-97 AT4G37880 405 / 2e-140 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10007106 [exp] 196 / 6e-59 AT5G09630 150 / 1e-41 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10030305 [exp] 86 / 6e-18 AT2G39340 935 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Lus10001973 [exp] 86 / 7e-18 AT2G39340 914 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G080500 [exp] 459 / 6e-162 AT4G37880 419 / 3e-146 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.001G286300 [exp] 449 / 9e-158 AT5G09630 417 / 3e-145 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.015G128600 [exp] 379 / 3e-130 AT4G37880 486 / 3e-172 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.012G127300 [exp] 363 / 4e-124 AT4G37880 469 / 1e-165 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.008G047300 [exp] 91 / 5e-20 AT3G55070 605 / 0.0 LisH/CRA/RING-U-box domains-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020487 pacid=23139544 polypeptide=Lus10020487 locus=Lus10020487.g ID=Lus10020487.BGIv1.0 annot-version=v1.0 ATGACGAAGGATTCCTTTAATCATATCGTTAAGAAGCGGAAGTTCTGTTTATCAAAGTCCCTTGAATTAATTGATCTAGTCAGCCTCGAAATCGAGTTAG CACTAGAACAGATTCAATCAATTCACAATCTTATTCCTTCTGAAGATCAGAAAGCCGTCCTCAGGCAGCTCAAACATAGGCTTATCACAATGAGCCCACT CTCCCTATTAGAAGGGCCGCAGAAGGAACTGGGTACGAGCGTTTCGAAGTACCCAAAGCTCTTAGAGAAGTCGTGGAATCCCGATGTATCCAAAGCTTAC AGAAGTCTTGAGTTTGATTTCCACATAATCAACCAGGTAATAGCTGCACATTTTTACCAGAAAGGTTTGTTTGATTTGGGTGATTGTCTAATGAGTGAAG CTGGAGAACCAGAAGCAACTTCCTTGAAGTCTCAATTCATGGAACTGCAAAGAATGTGTGATGCCATTAGGGTTAGGAACCTTGAGCCTGCCCTGACATG GGTCTCAAACAACCTCGAGAAACTTCGGCAGTTTGGCTCTAAGCTTGAGTTGAAGCTGTATAGCTCGCAGTTTATGGAGATTCTCAAGGGAGGAACTCGG GCCGATACTCTTCATGCTCTCAACTATGCAAAAACTCACCTTTCTCCTCTTGCAGGGGTTTACATGAAAGAGTTCCAAAAGATTACTGTTTGTTTGTTGT GGAGTGGGAAGCTGGAAAAGTACCCTTACTCCGAGTTCTCGTCTCCAACCTATTGGGATGATTTGGCCGATGAGTTTAGTAGGGATTTCCACAAGGTTAT GGGGCAGTGCTATAAGGACCCGTTATCTGCAGCTATTGCAGCTGGTATTGAGGGACTCCCTACCCTGTTGAAGCTGGCGAATGCGATGTCTGTGAAGAAT CAGGAATGGAAAGCGTTGAAGCAGCTGCCAGTGCCGGTGGAACTAAGCAGAACTTTCCAGTTTCATTCAATATTTGTTTGTCCGGTGAGTAGGGAGGAAA GTAATGAAGAGAATCCACCTATGATGATGCCATGCCTGCATGTTCTGTGCAAGAAGTCAATAATAAAGCTCTCAAAAAACAGTTCCAGGTCGTTTAAGTG CCCTTACTGTCCAGCAGAGGCTACAGTTGCACTATGCAAGCAGTTGGTTTTTTAG
AA sequence Show only first row Show all	>Lus10020487 pacid=23139544 polypeptide=Lus10020487 locus=Lus10020487.g ID=Lus10020487.BGIv1.0 annot-version=v1.0 MTKDSFNHIVKKRKFCLSKSLELIDLVSLEIELALEQIQSIHNLIPSEDQKAVLRQLKHRLITMSPLSLLEGPQKELGTSVSKYPKLLEKSWNPDVSKAY RSLEFDFHIINQVIAAHFYQKGLFDLGDCLMSEAGEPEATSLKSQFMELQRMCDAIRVRNLEPALTWVSNNLEKLRQFGSKLELKLYSSQFMEILKGGTR ADTLHALNYAKTHLSPLAGVYMKEFQKITVCLLWSGKLEKYPYSEFSSPTYWDDLADEFSRDFHKVMGQCYKDPLSAAIAAGIEGLPTLLKLANAMSVKN QEWKALKQLPVPVELSRTFQFHSIFVCPVSREESNEENPPMMMPCLHVLCKKSIIKLSKNSSRSFKCPYCPAEATVALCKQLVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10020487 [exp]	0	1
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Lus10011126 [exp]	2.4	0.9195
AT5G06830			unknown protein		Lus10016277 [exp]	7.5	0.9001
AT1G16670			Protein kinase superfamily pro...		Lus10042851 [exp]	8.1	0.9158
AT2G30590	WRKY	WRKY21	WRKY DNA-binding protein 21 (....		Lus10024864 [exp]	13.9	0.8209
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039425 [exp]	15.2	0.8917
AT3G12550		FDM3	factor of DNA methylation 3, X...		Lus10000948 [exp]	15.9	0.8939
AT2G39080		EMB2799	EMBRYO DEFECTIVE 2799, NAD(P)-...		Lus10038637 [exp]	18.0	0.8729
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10041237 [exp]	18.5	0.8952
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10011107 [exp]	19.3	0.8966
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Lus10032849 [exp]	22.8	0.8773

Compare expression of checked genes

Lus10020487 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.