Plant FIBer expression Database

Lus10020488 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G64480 88 / 4e-22 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007107
[exp]
262 / 2e-90 AT5G64480 113 / 7e-32 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G080400
[exp]
133 / 7e-40 AT5G64480 106 / 2e-29 unknown protein
Potri.001G286200
[exp]
128 / 6e-38 AT5G64480 111 / 2e-31 unknown protein
PFAM info
Representative CDS sequence
>Lus10020488 pacid=23139541 polypeptide=Lus10020488 locus=Lus10020488.g ID=Lus10020488.BGIv1.0 annot-version=v1.0
ATGGCTTCGCGAGTCTATCAATGTCATCCAAAACCTCCCTTCCAACCAGTAAAGATCCAACCTTGCGCCATTCCCAGGGCTACCCAGCTACCCTACAACA
GCAGACCCAGAAGAACCCCAATCCTGTGCGCAAGCACCAAAAAGAGCGCCGCCGAAAATTCGAATCTCGCCACAGATTTCGCGAAGCAAGTGTCCAGGAT
AAACACCAATGTGACACAGAGAGAAGATGCCATGAAGAAGAGTAGAGAAATGCTGTTCGGCGAGCTCTTTAAGTTCTGGGATTTGGAGGAAGACGATGTG
GAAATGAGATGGGACGAAATGAATCAAGAAGAGAAGAAGGTGTTGGTTAAAGGGTTTGTGGATGAGTGGGATGCCAATTTTCACCCATTATCAGCTAGGT
CAGTTGAGGATTTGATTGCAGAGCATATACAGGAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGCTGTCATTGCCGTCTTCTGAGTTATCTTCTTC
TGCTTTCTTTCCTAGATTGAGGAGATTAATGAGATTTGCTTCGGAATAA
AA sequence
>Lus10020488 pacid=23139541 polypeptide=Lus10020488 locus=Lus10020488.g ID=Lus10020488.BGIv1.0 annot-version=v1.0
MASRVYQCHPKPPFQPVKIQPCAIPRATQLPYNSRPRRTPILCASTKKSAAENSNLATDFAKQVSRINTNVTQREDAMKKSREMLFGELFKFWDLEEDDV
EMRWDEMNQEEKKVLVKGFVDEWDANFHPLSARSVEDLIAEHIQEKKKKKKKKKKELSLPSSELSSSAFFPRLRRLMRFASE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G64480 unknown protein Lus10020488
[exp]
0 1
AT3G29290 EMB2076 embryo defective 2076, Pentatr... Lus10018198
[exp]
6.9 0.8144
AT1G75080 BZR BZR1 BRASSINAZOLE-RESISTANT 1, Bras... Lus10014326
[exp]
9.8 0.7957
AT2G34560 P-loop containing nucleoside t... Lus10038499
[exp]
15.0 0.8052
AT4G03080 BSL1 BRI1 suppressor 1 (BSU1)-like ... Lus10024772
[exp]
37.9 0.7034
AT3G07880 SCN1 SUPERCENTIPEDE1, Immunoglobuli... Lus10006400
[exp]
38.3 0.7870
AT5G07610 F-box family protein (.1) Lus10015048
[exp]
45.3 0.7472
AT2G38025 Cysteine proteinases superfami... Lus10027758
[exp]
48.9 0.7949
AT5G44440 FAD-binding Berberine family p... Lus10023367
[exp]
52.3 0.7447
AT2G02120 PDF2.1, LCR70 LOW-MOLECULAR-WEIGHT CYSTEINE-... Lus10019226
[exp]
56.4 0.7353
AT5G60890 MYB AtMYB34, MYB34,... ALTERED TRYPTOPHAN REGULATION ... Lus10015713
[exp]
57.6 0.7249

Lus10020488 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.