Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64470 539 / 0 TBL12 TRICHOME BIREFRINGENCE-LIKE 12, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2), Plant protein of unknown function (DUF828) (.3) AT2G14530 303 / 5e-100 TBL13 TRICHOME BIREFRINGENCE-LIKE 13 (.1) AT3G62390 179 / 2e-51 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT5G20590 179 / 2e-51 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT3G12060 172 / 2e-48 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT1G60790 169 / 2e-47 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) AT5G06230 160 / 2e-45 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2) AT5G06700 163 / 1e-44 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT3G11570 156 / 2e-43 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 (.1) AT5G19160 156 / 5e-43 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007108 [exp] 724 / 0 AT5G64470 553 / 0.0 TRICHOME BIREFRINGENCE-LIKE 12, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2), Plant protein of unknown function (DUF828) (.3) Lus10012477 [exp] 316 / 5e-105 AT2G14530 558 / 0.0 TRICHOME BIREFRINGENCE-LIKE 13 (.1) Lus10002430 [exp] 174 / 2e-49 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10021066 [exp] 173 / 3e-48 AT5G06700 671 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10011932 [exp] 168 / 1e-47 AT5G20590 543 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10027637 [exp] 164 / 1e-45 AT5G20590 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10028974 [exp] 157 / 1e-43 AT3G55990 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10003734 [exp] 157 / 1e-43 AT3G06080 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10007497 [exp] 155 / 1e-42 AT3G55990 681 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G286100 [exp] 577 / 0 AT5G64470 550 / 0.0 TRICHOME BIREFRINGENCE-LIKE 12, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2), Plant protein of unknown function (DUF828) (.3) Potri.009G082500 [exp] 301 / 4e-99 AT2G14530 563 / 0.0 TRICHOME BIREFRINGENCE-LIKE 13 (.1) Potri.002G195800 [exp] 189 / 1e-54 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.006G071500 [exp] 170 / 7e-48 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.018G133000 [exp] 167 / 8e-47 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.006G193900 [exp] 162 / 3e-44 AT5G06700 681 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.016G074800 [exp] 157 / 5e-44 AT3G11570 506 / 2e-179 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Potri.016G059300 [exp] 159 / 3e-43 AT5G06700 654 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.010G043300 [exp] 156 / 2e-42 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Potri.001G010900 [exp] 155 / 4e-42 AT5G06700 472 / 5e-161 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10020489 pacid=23139540 polypeptide=Lus10020489 locus=Lus10020489.g ID=Lus10020489.BGIv1.0 annot-version=v1.0 ATGCAACCAAAGCTTCTCCAGAAGCAGCTGCCGTATCTGCTCTTCGTCTCCCTTATCCTCCTCTATCTCTACTCTTTCGCTCTCCGTCCTTACTCCTCCA AATCCAATTCCCTAATTTCATCATCTGTGCCGTCCTGCAATCTCTTCAATGGAAGCTGGGTTCTACGCGCCACCAGTACCAGTCCTCTCTACGACGACTC CTGCCCATTTCACAGAAACGCATGGAACTGCATTAGGAACCAGAGAGACAACATGGATCTGATCAATTCTTGGAAATGGGTGCCGCAAGATTGTGAATTG CCTCGAATCGATCCGGAGAGATTTCTAGGATTCATGAGGAATAAAAAGATCGGGTTTATCGGGGATTCTTTGAATGAGAACTTTCTGGTGTCGTTTTTAT GCACTCTACGAGAAGCTGACAATGGTGCTAGGAAGTGGAAGAAGAAGGGGGCTTGGAGAGGGGCTTATTTCCCCAAGTTCAATGTTGTTGTTGCCTATCA CCGTTCGGTGCTGCTTGCTAAATATAACCAGAAGGATATGAAATTGACCAATGAAGGAGTTAAGGGGACACATCGAATAGACGTTGATGTACCTGGAGAC GAGTGGGTCAACGTTACTGGCTTTTATGATTTCCTCATTTTCAACACAGGCCATTGGTGGAGTTATGCTAAATTTCCACAAGAGGCACCTTTAGTGTTTT ACCGGAAAGGGAAGCCGATATATCCCCCTCTTGGGTTGTTTGACGGATTGAAGATAGTTCTTGAGAACATGGTGTCATATATTGAAAAACAAGTTCCAAA GAAGACAGTCAAGTTTTGGCGACTACAATCACCACGACATTTTTATGGCGGTGAATGGAATCAGAATGGAAGCTGCTTGTTCAAGGAGCCCCTCAAGGAG AACGAGCTTGACCTCTGGTTCGATCCCAGAAACAATGGAGTGAACAAGGAAGCAAGACAAATCAACCGGTTTATCGAGGACACATTGAAAGGATCAGATA TCGAGTTGCTGGATTTGACACATCTCAGCGAGTTCAGAGCTGATGCCCACCCCGCAATTTGGCTAGGGAAGAAAGGTGCTGTGGAGATCTGGGGTCAAGA CTGCATGCATTGGTGCCTGCCTGGTGTCCCAGATACTTGGGTTGATATATTATCGAAGCTGATCTATGATAAGCTGGAAGCAGCAGCAGTACGATGA
AA sequence Show only first row Show all	>Lus10020489 pacid=23139540 polypeptide=Lus10020489 locus=Lus10020489.g ID=Lus10020489.BGIv1.0 annot-version=v1.0 MQPKLLQKQLPYLLFVSLILLYLYSFALRPYSSKSNSLISSSVPSCNLFNGSWVLRATSTSPLYDDSCPFHRNAWNCIRNQRDNMDLINSWKWVPQDCEL PRIDPERFLGFMRNKKIGFIGDSLNENFLVSFLCTLREADNGARKWKKKGAWRGAYFPKFNVVVAYHRSVLLAKYNQKDMKLTNEGVKGTHRIDVDVPGD EWVNVTGFYDFLIFNTGHWWSYAKFPQEAPLVFYRKGKPIYPPLGLFDGLKIVLENMVSYIEKQVPKKTVKFWRLQSPRHFYGGEWNQNGSCLFKEPLKE NELDLWFDPRNNGVNKEARQINRFIEDTLKGSDIELLDLTHLSEFRADAHPAIWLGKKGAVEIWGQDCMHWCLPGVPDTWVDILSKLIYDKLEAAAVR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64470		TBL12	TRICHOME BIREFRINGENCE-LIKE 12...		Lus10020489 [exp]	0	1
AT1G06230		GTE4	global transcription factor gr...		Lus10007096 [exp]	1.7	0.7585
AT4G33140			Haloacid dehalogenase-like hyd...		Lus10039915 [exp]	9.4	0.7318
AT3G18000		XPL1, NMT1, XIP...	XIPOTL 1, N-METHYLTRANSFERASE ...		Lus10018010 [exp]	13.4	0.7481
AT2G38650		GAUT7, LGT7	LIKE GLYCOSYL TRANSFERASE 7, g...		Lus10003235 [exp]	24.1	0.7488
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10031365 [exp]	31.7	0.7460
AT3G63460		EMB2221	transducin family protein / WD...		Lus10005322 [exp]	32.0	0.6981
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10008042 [exp]	38.7	0.7016
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10003526 [exp]	52.6	0.7226
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10038146 [exp]	54.2	0.7320
AT1G47380			Protein phosphatase 2C family ...		Lus10042659 [exp]	64.0	0.6803

Compare expression of checked genes

Lus10020489 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.