Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35200 114 / 1e-30 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 110 / 9e-29 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 109 / 1e-28 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17080 108 / 2e-28 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 67 / 9e-13 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35690 61 / 1e-10 Arabidopsis protein of unknown function (DUF241) (.1) AT3G51400 59 / 5e-10 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 55 / 9e-09 Arabidopsis protein of unknown function (DUF241) (.1) AT1G76210 49 / 1e-06 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35680 46 / 2e-05 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007109 [exp] 335 / 9e-117 AT2G17070 189 / 2e-59 Arabidopsis protein of unknown function (DUF241) (.1) Lus10014447 [exp] 199 / 3e-63 AT2G17080 205 / 2e-65 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025119 [exp] 197 / 1e-62 AT2G17080 206 / 6e-66 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023959 [exp] 197 / 2e-62 AT2G17080 224 / 3e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023965 [exp] 191 / 7e-60 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023958 [exp] 191 / 9e-60 AT4G35200 193 / 6e-61 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023953 [exp] 189 / 4e-59 AT4G35200 192 / 8e-61 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023952 [exp] 184 / 2e-57 AT2G17080 220 / 1e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023964 [exp] 181 / 6e-56 AT2G17080 223 / 8e-73 Arabidopsis protein of unknown function (DUF241) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G182700 [exp] 143 / 4e-41 AT2G17080 200 / 2e-63 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142700 [exp] 135 / 7e-38 AT2G17080 204 / 9e-65 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182550 [exp] 127 / 5e-35 AT2G17080 196 / 6e-62 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182400 [exp] 122 / 4e-33 AT2G17070 193 / 2e-60 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182250 [exp] 122 / 6e-33 AT2G17080 191 / 1e-59 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142500 [exp] 114 / 4e-30 AT2G17070 175 / 2e-53 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142400 [exp] 111 / 4e-29 AT2G17080 202 / 4e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142600 [exp] 111 / 4e-29 AT2G17080 202 / 6e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012400 [exp] 85 / 3e-19 AT2G17080 143 / 2e-41 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249000 [exp] 81 / 1e-17 AT2G17080 159 / 1e-47 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF03087 [flax] [poplar] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10020490 pacid=23139580 polypeptide=Lus10020490 locus=Lus10020490.g ID=Lus10020490.BGIv1.0 annot-version=v1.0 ATGGCGGCAGTATCTTCCCATGCTCGATCCAACAGTGTACCTGTTATCTCACACCCTCTAGTTTCAGAAATTGATGACCAAGTTTGCAACTTGAGACAAT CTCAAGCTTCTGCATCCACATCATCATCCATAGGCCAAAACCTGAATGTACTCCAGGTTCCCTTACTACAACTTCCATTAACCCAGCAAGCATCGCAAAA GTCCTTGAATGAGCTATTAGATGGATCTCTTAATCTCTTGGATTTTTGCAACAATGTCAAGGATGCCTTGTCACAGATGAAGGACTCCGTCGTGGAACTT CAATCCGTTATCCGGAGAAGGCAACAAGGTGGTTTGGAAGGAGAAGCCACCACAAGGTACCTCAACTCTAGAAAGACTATCAAGAAAACAATTCATAAGG TGTTGAAGGGTATGGAGAGCAAGAAATCGGTTTCATCAGCCGACAACAACATCGAGGTGATTACCATGTTAAGAGAGGCTGAATCCATTGTTGTCACTGT GTTGGAGAGTTTGTTGTTGTTCATCTCGCAATCAAACTCCAAACCAAGCAAGAGCCGGTCATTAGTTTATAAGCTTGTGGCTGTCCAGAAAAGGGTAACA AGTCAAGATGAAGTAAGTGCAAATGAATTTGCAGAGGTGGATGCCTCTTTGACGTCGAAGAAATTAACCAAGGAGGTTCGAGTTCATCTCAAGAACTTGC AGCTCTGCATTCAAGATCTAGAAGTTGGAGTTGAATCCCTGTTTAGGCGTTTGATTAGAACAAGAGCATCCATTCTCAATAACTATAACCTGTGA
AA sequence Show only first row Show all	>Lus10020490 pacid=23139580 polypeptide=Lus10020490 locus=Lus10020490.g ID=Lus10020490.BGIv1.0 annot-version=v1.0 MAAVSSHARSNSVPVISHPLVSEIDDQVCNLRQSQASASTSSSIGQNLNVLQVPLLQLPLTQQASQKSLNELLDGSLNLLDFCNNVKDALSQMKDSVVEL QSVIRRRQQGGLEGEATTRYLNSRKTIKKTIHKVLKGMESKKSVSSADNNIEVITMLREAESIVVTVLESLLLFISQSNSKPSKSRSLVYKLVAVQKRVT SQDEVSANEFAEVDASLTSKKLTKEVRVHLKNLQLCIQDLEVGVESLFRRLIRTRASILNNYNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17070			Arabidopsis protein of unknown...		Lus10020490 [exp]	0	1
AT2G17070			Arabidopsis protein of unknown...		Lus10007109 [exp]	1.4	0.8960
AT5G46060			Protein of unknown function, D...		Lus10005267 [exp]	3.3	0.8756
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10034617 [exp]	8.9	0.8350
AT3G23770			O-Glycosyl hydrolases family 1...		Lus10023226 [exp]	9.3	0.8929
AT3G10150		ATPAP16, PAP16	purple acid phosphatase 16 (.1...		Lus10042026 [exp]	12.7	0.8838
AT4G33000		SCABP8, ATCBL10...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10037648 [exp]	17.3	0.8723
AT2G21150		XCT	XAP5 CIRCADIAN TIMEKEEPER, XAP...		Lus10012170 [exp]	17.4	0.8856
					Lus10039025 [exp]	19.8	0.8819
AT5G66040		STR16	sulfurtransferase protein 16 (...		Lus10012566 [exp]	21.4	0.8734
AT1G50510			indigoidine synthase A family ...		Lus10022419 [exp]	24.2	0.8459

Compare expression of checked genes

Lus10020490 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.