Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14520 458 / 6e-161 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G33700 449 / 2e-157 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT1G47330 322 / 4e-106 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT5G52790 312 / 1e-102 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G14240 285 / 3e-92 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) AT1G03270 281 / 9e-91 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G14230 277 / 5e-89 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT1G55930 53 / 2e-07 CBS domain-containing protein / transporter associated domain-containing protein (.1) AT3G13070 53 / 3e-07 CBS domain-containing protein / transporter associated domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012476 [exp] 605 / 0 AT2G14520 591 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10005259 [exp] 482 / 2e-170 AT2G14520 679 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10030665 [exp] 430 / 7e-152 AT2G14520 498 / 3e-178 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10032715 [exp] 332 / 4e-110 AT1G47330 646 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10027528 [exp] 324 / 4e-107 AT5G52790 560 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10039289 [exp] 322 / 1e-106 AT5G52790 557 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10034024 [exp] 296 / 3e-96 AT4G14230 675 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10012375 [exp] 293 / 3e-95 AT1G03270 627 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10028010 [exp] 291 / 1e-94 AT1G03270 635 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G288000 [exp] 476 / 5e-168 AT2G14520 620 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.009G082300 [exp] 466 / 8e-164 AT2G14520 593 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.014G012400 [exp] 372 / 3e-127 AT2G14520 516 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.017G147900 [exp] 337 / 3e-112 AT5G52790 580 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.014G196900 [exp] 317 / 7e-104 AT1G47330 575 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.008G202100 [exp] 290 / 3e-94 AT4G14240 632 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) Potri.010G030200 [exp] 290 / 7e-94 AT4G14240 611 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) Potri.002G260401 [exp] 53 / 4e-09 AT1G47330 58 / 3e-11 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.001G362100 [exp] 51 / 1e-06 AT1G55930 858 / 0.0 CBS domain-containing protein / transporter associated domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01595 [flax] [poplar] DUF21 Cyclin M transmembrane N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10020494 pacid=23139542 polypeptide=Lus10020494 locus=Lus10020494.g ID=Lus10020494.BGIv1.0 annot-version=v1.0 ATGGCGGTGGAGTACAGGTGCTGCGACACTGAATTCTTCCTTCAGATTGCGATAATTGTGCTGCTGGTGTTGTTCGCCGGTCTTATGTCCGGCCTAACTT TGGGGCTAATGTCGATGAGCCTCGTCGATCTCGAAGTCGTGGCTAAATCTGGAAAACCTAAGGACCGCAAATACGCTGAAAGGATACTGCCAGTTGTTAG AAATCAGCACCTAATGCTCTGCACACTCCTCATTTGCAATGCTGCTGCGATGGAGGCTCTCCCAATTTTCCTGGATAAACTGGTTACAGCACTGGGTGCC GTTCTTATTTCAGTCACTCTGCTTCTTCTGTTTGGCGAGATTCTGCCACAAGCTTTTTGCTCTAGATATGGGCTAGCAATTGGTGCTACGGTAGCTCCAT TCGTTCGCGTCCTTGTTTGGATATGCTTTCCTGTTGCCTATCCAATAAGCAAGGTTCTAGATTATGTCCTGGGTCATGAACATGTTGCTCTTTTTCGAAG AGCTGAACTGAAAACACTAGTAAATATGCATGGGAACGAGGCTGGAAAAGGTGGAGAGCTCACCCATGATGAGACAACAATTATTGCTGGAGCACTAGAG CTCACAGAGAAAACAGCAAGCGATGCAATGACTCCAATCTCCGATACATTCGCTATTGATATCAACGCTAAGCTTGACCGTGACATGATGAACTTGATAC TAGAGAAAGGACACAGTCGAGTCCCAGTATATTATGAGCAACCTACAAACATCATTGGACTCATCCTGTACAACAAAGCAGAACAGCAACAGCAACAGTT GATGCCTGCCGTCAGTAGTTCAACTGAAGGAGTTCCGGTTAAAGAAGTGAGGGTTGATGTGGACGGGAAGGCAAGTCAAGAGAAGTCATATAGAAGTAGG AGCGCATCATTTCATAAATGGAAGAGCTTTGCCAACAGCAGCAACAGGTCATTGAAGAGTTCACAGAGCAGGAAAAGGGTGAAGGACAAAGTTGACTCCG ACATCCTCAAAATGGACGGATACATCCCAACTCTTCCAGAGGAAGAAGAAGCCGTCGGACTCATAACAATGGAAGATCTCATCGAAGAACTTTTACAGGA GGAGATTTACGATGAAACGGACCACCACTACGAAGAGTAG
AA sequence Show only first row Show all	>Lus10020494 pacid=23139542 polypeptide=Lus10020494 locus=Lus10020494.g ID=Lus10020494.BGIv1.0 annot-version=v1.0 MAVEYRCCDTEFFLQIAIIVLLVLFAGLMSGLTLGLMSMSLVDLEVVAKSGKPKDRKYAERILPVVRNQHLMLCTLLICNAAAMEALPIFLDKLVTALGA VLISVTLLLLFGEILPQAFCSRYGLAIGATVAPFVRVLVWICFPVAYPISKVLDYVLGHEHVALFRRAELKTLVNMHGNEAGKGGELTHDETTIIAGALE LTEKTASDAMTPISDTFAIDINAKLDRDMMNLILEKGHSRVPVYYEQPTNIIGLILYNKAEQQQQQLMPAVSSSTEGVPVKEVRVDVDGKASQEKSYRSR SASFHKWKSFANSSNRSLKSSQSRKRVKDKVDSDILKMDGYIPTLPEEEEAVGLITMEDLIEELLQEEIYDETDHHYEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14520			CBS domain-containing protein ...		Lus10020494 [exp]	0	1
AT3G07140			GPI transamidase component Gpi...		Lus10038183 [exp]	7.7	0.6986
AT5G19450		CPK8, CDPK19	calcium-dependent protein kina...		Lus10009947 [exp]	9.0	0.7600
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10009520 [exp]	9.4	0.7401
AT1G78560			Sodium Bile acid symporter fam...		Lus10035803 [exp]	11.2	0.6911
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10043454 [exp]	13.4	0.6712
AT4G16650			O-fucosyltransferase family pr...		Lus10028957 [exp]	17.5	0.6778
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10023197 [exp]	17.5	0.5721
AT1G77170			Tetratricopeptide repeat (TPR)...		Lus10029884 [exp]	20.1	0.6422
AT1G17665			unknown protein		Lus10006153 [exp]	22.4	0.6651
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10033954 [exp]	23.6	0.6515

Compare expression of checked genes

Lus10020494 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.