Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21460 212 / 2e-66 Ribosomal protein S24/S35, mitochondrial (.1) AT3G18240 212 / 2e-66 Ribosomal protein S24/S35, mitochondrial (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008778 [exp] 283 / 4e-94 AT3G18240 520 / 0.0 Ribosomal protein S24/S35, mitochondrial (.1.2) Lus10022237 [exp] 280 / 4e-93 AT3G18240 513 / 0.0 Ribosomal protein S24/S35, mitochondrial (.1.2) Lus10012470 [exp] 0 / 1 AT3G18240 96 / 2e-25 Ribosomal protein S24/S35, mitochondrial (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G044100 [exp] 211 / 4e-66 AT3G18240 461 / 2e-161 Ribosomal protein S24/S35, mitochondrial (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020495 pacid=23139562 polypeptide=Lus10020495 locus=Lus10020495.g ID=Lus10020495.BGIv1.0 annot-version=v1.0 ATGCGACAATCTTTGTTGCGAAACTTCACTCGGTGTCTCCTTCATTCGTCTAGCAATGTCGGATCCTCATTCACTAATCCTTCCATCGTCCCGTTACCGG CTGCTTCTGCTCGTTCCATACTTAGGCTGTACTCGTCCGAGTCCGGCGAGAAGCCAGGCCCTGTCCCCGATTCATCAGCATTGGCGCAGGTCCGGAAGGA AGGCGAGTCCCGGAAAGTAGAGGACGTGAGTAACAAAGACTTGAAGGAAATGATGGAGAAGTACTTCAAAGCTGATGTGAAGGAGAAAGTCGAGAAGAAG TTCAATGAGCTGGGGGATTTGTGTGAAAATGGGGGACTTGAGCCAGAAGAAGCTTATAAATTGTTCAAAGAATTCGAGGATCAAATAGTATTGGAGTATG GAAATAGAATTGAAGATGAGGGCGCACCACAGTTTGATGAGACAACTGTGCCTGACAAGAAAAAAGATACAGATGATCCACCAGGCGAGGGGCCAATTCT TAGGTGGACAACTAGGGCGGTCTTTGCCCCCGGTGGTGATGCGTGGCATCCCAAAAACAGGAAAGTCAAGATGTATGAACACAGAGAAGAAAACAGGAAA GATTGCCTGAGAACTCTCTTCTCAATAATAGAGGAAGCTGGGAAAGCAAACAAATTGGCTGACGATGCTCGAGTATCATATGTCAAGTCCAGACTGAAGG CCAATCCAGCTTTTATGGAGAGGCTGCGTGTAAAGGTTGCAAGCCGAAGTTGTAGTAATGTAGTTAATGCATGA
AA sequence Show only first row Show all	>Lus10020495 pacid=23139562 polypeptide=Lus10020495 locus=Lus10020495.g ID=Lus10020495.BGIv1.0 annot-version=v1.0 MRQSLLRNFTRCLLHSSSNVGSSFTNPSIVPLPAASARSILRLYSSESGEKPGPVPDSSALAQVRKEGESRKVEDVSNKDLKEMMEKYFKADVKEKVEKK FNELGDLCENGGLEPEEAYKLFKEFEDQIVLEYGNRIEDEGAPQFDETTVPDKKKDTDDPPGEGPILRWTTRAVFAPGGDAWHPKNRKVKMYEHREENRK DCLRTLFSIIEEAGKANKLADDARVSYVKSRLKANPAFMERLRVKVASRSCSNVVNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18240			Ribosomal protein S24/S35, mit...		Lus10020495 [exp]	0	1
AT2G34640		HMR, PTAC12	HEMERA, plastid transcriptiona...		Lus10038523 [exp]	23.7	0.8173
AT5G25330			Core-2/I-branching beta-1,6-N-...		Lus10002919 [exp]	35.7	0.7933
AT1G71920		HISN6B	HISTIDINE BIOSYNTHESIS 6B (.1....		Lus10005564 [exp]	35.7	0.7988
AT4G30845			unknown protein		Lus10026098 [exp]	37.4	0.8107
AT2G40760			Rhodanese/Cell cycle control p...		Lus10034243 [exp]	43.5	0.7967
AT1G69630			F-box/RNI-like superfamily pro...		Lus10008245 [exp]	57.0	0.7450
AT5G03800		EMB166, EMB175,...	embryo defective 1899, EMBRYO ...		Lus10035587 [exp]	58.7	0.7987
AT2G38025			Cysteine proteinases superfami...		Lus10027758 [exp]	63.1	0.7983
AT4G21770			Pseudouridine synthase family ...		Lus10018352 [exp]	66.7	0.7904
AT2G34640		HMR, PTAC12	HEMERA, plastid transcriptiona...		Lus10023283 [exp]	67.0	0.7982

Compare expression of checked genes

Lus10020495 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.