Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61330 335 / 3e-112 rRNA processing protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012469 [exp] 596 / 0 AT5G61330 373 / 5e-127 rRNA processing protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G085100 [exp] 392 / 5e-135 AT5G61330 409 / 8e-141 rRNA processing protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08164 [flax] [poplar] TRAUB Apoptosis-antagonizing transcription factor, C-terminal
Representative CDS sequence Show only first row Show all	>Lus10020496 pacid=23139550 polypeptide=Lus10020496 locus=Lus10020496.g ID=Lus10020496.BGIv1.0 annot-version=v1.0 ATGCCGACTTCATATACGGTAGAACAGGGTAGTGATCGTGAATATGTGGAAGAGGAGGAAAACGGAGATGGTACGGACCAAGAAGGAGATGAGGAAGATG AGGAGGAGGATTCTGATGAAGATGAGAATGAAGAAATTGGTTCTAGTGAGGACGAGGACGAGGGAATTGAAGAGATTGGTTTACTAAAGAATAACACTCA CAAAGATGACGAGTTGGAAGATCTCGATAAGGAATACAGGGACCTCCAAAATCAACAACTAGACTTTCTGAAGAACCTCAAACTCCATAAAGAAGAAGAT ATTCTTAAAGGTCAAGCTGTGAAGAACCAGAAGGCTATCTGGGAATTGAGTCTTGGACTTAGGTTCTCACTTCAGGAACCATTCTCAAATTCAAATAGAC TTCCACTGGAACCTATTCGGTCTACATTTTGCAATTCAGATAAAGGAGTGAGGGAGGCTTATGATGATCTCGTTGTCTCATCCAAAAAGACTCTGGAATC TCTAGTCGAACTAGAAGAGGCTCTACTCGAGAGGAATCCTTCAATTTCTCAATCATCTACTGGTAATGTTGGGAAGTCTTTGAAGAAGCAGTCCACTCAC TTGAATGATGAAGAAGAGGAAGAATGGTCTAGAATTTCAAAATTGCATACAAGGATAGCTCCATTCAGAAATAAATCCATTGATAAATGGCAGAGAAGGT CACAAGTTACAACTGGTGCAGCAGCTATTACGAACAAGTTGCATGCTTTCAATCAGAATATAAGCGAACAAGTTGCTGCATCTATGAGGGATTCGAGCAA AATGGTTAAGCAAATGCAGTTGATAAGGTCCACTGCTAGAGTTTTTGGTGATGTTACATCCCAGGAAAGCAGTCTTAACGGCAAGGAGGCACAACCTGAT GGGGACCCCGAACTTTTTGATGATTCTGAGTTTCGTCAACGACTACTTGTGGAATTCTATAAATCAGTTGATCCGGACTCAACTGAAAGGGCACTTTATG CTCTTAAAAGGGATCAAACCAAGAAGAGAAAGATTGTGGACCGGCGCGCCTCAAAGTACCGCAAGATCAGGCACAGTGTACACGAGAAGATTGTGAATTT CATGGCTCCTCAGCGTGTGGTTCGTCCACCTATGGCTGATAAACTACTTGAGAATTTGTTCGGTCTCAAGAGACCAAAAGCGTAG
AA sequence Show only first row Show all	>Lus10020496 pacid=23139550 polypeptide=Lus10020496 locus=Lus10020496.g ID=Lus10020496.BGIv1.0 annot-version=v1.0 MPTSYTVEQGSDREYVEEEENGDGTDQEGDEEDEEEDSDEDENEEIGSSEDEDEGIEEIGLLKNNTHKDDELEDLDKEYRDLQNQQLDFLKNLKLHKEED ILKGQAVKNQKAIWELSLGLRFSLQEPFSNSNRLPLEPIRSTFCNSDKGVREAYDDLVVSSKKTLESLVELEEALLERNPSISQSSTGNVGKSLKKQSTH LNDEEEEEWSRISKLHTRIAPFRNKSIDKWQRRSQVTTGAAAITNKLHAFNQNISEQVAASMRDSSKMVKQMQLIRSTARVFGDVTSQESSLNGKEAQPD GDPELFDDSEFRQRLLVEFYKSVDPDSTERALYALKRDQTKKRKIVDRRASKYRKIRHSVHEKIVNFMAPQRVVRPPMADKLLENLFGLKRPKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61330			rRNA processing protein-relate...		Lus10020496 [exp]	0	1
AT5G28060			Ribosomal protein S24e family ...		Lus10015941 [exp]	1.7	0.9186
AT1G43860			sequence-specific DNA binding ...		Lus10042780 [exp]	2.2	0.9219
AT4G08310			unknown protein		Lus10003736 [exp]	2.4	0.9123
AT3G44680		HDA09, HDA9	histone deacetylase 9 (.1)		Lus10020570 [exp]	2.8	0.9202
AT4G00830		LIF2	LHP1-Interacting Factor 2, RNA...		Lus10002689 [exp]	5.0	0.9172
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10030918 [exp]	8.4	0.8843
AT4G17020			transcription factor-related (...		Lus10012849 [exp]	8.9	0.9175
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10021351 [exp]	9.1	0.8355
AT1G80750			Ribosomal protein L30/L7 famil...		Lus10019603 [exp]	9.2	0.8864
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Lus10032065 [exp]	9.6	0.8767

Compare expression of checked genes

Lus10020496 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.