Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70840 149 / 3e-46 MLP31 MLP-like protein 31 (.1) AT1G70890 147 / 9e-46 MLP43 MLP-like protein 43 (.1) AT1G70830 145 / 4e-45 MLP28 MLP-like protein 28 (.1.2.3.4.5) AT1G70850 147 / 9e-45 MLP34 MLP-like protein 34 (.1.2.3) AT5G28010 140 / 4e-43 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G70880 122 / 8e-36 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT5G28000 115 / 4e-33 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G23130 112 / 6e-32 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G35260 93 / 1e-24 MLP165 MLP-like protein 165 (.1) AT1G35310 86 / 1e-21 MLP168 MLP-like protein 168 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020498 [exp] 209 / 3e-70 AT1G70830 160 / 7e-51 MLP-like protein 28 (.1.2.3.4.5) Lus10012466 [exp] 209 / 3e-70 AT1G70830 161 / 3e-51 MLP-like protein 28 (.1.2.3.4.5) Lus10012742 [exp] 205 / 1e-68 AT1G70830 158 / 6e-50 MLP-like protein 28 (.1.2.3.4.5) Lus10042490 [exp] 83 / 2e-20 AT1G14930 107 / 3e-30 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10008932 [exp] 84 / 5e-20 AT4G14060 127 / 1e-36 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10028887 [exp] 81 / 6e-20 AT2G01520 129 / 1e-38 \(Zusammen-CA\)-enhanced 1, MLP-like protein 328 (.1) Lus10033397 [exp] 80 / 2e-19 AT1G14950 121 / 1e-35 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10008930 [exp] 79 / 3e-19 AT5G28010 126 / 2e-37 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10002644 [exp] 69 / 5e-16 AT1G70850 58 / 1e-11 MLP-like protein 34 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G111000 [exp] 197 / 1e-65 AT1G70830 175 / 8e-57 MLP-like protein 28 (.1.2.3.4.5) Potri.017G051200 [exp] 115 / 9e-34 AT1G70840 116 / 3e-34 MLP-like protein 31 (.1) Potri.017G051100 [exp] 113 / 1e-32 AT1G70840 115 / 3e-33 MLP-like protein 31 (.1) Potri.008G131300 [exp] 100 / 2e-27 AT1G14930 100 / 1e-27 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.008G131100 [exp] 89 / 4e-23 AT1G70890 107 / 3e-30 MLP-like protein 43 (.1) Potri.008G131200 [exp] 86 / 8e-22 AT1G14930 122 / 4e-36 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.010G096000 [exp] 67 / 2e-14 AT1G24020 188 / 3e-62 MLP-like protein 423 (.1.2) Potri.004G020000 [exp] 45 / 3e-06 AT1G70880 69 / 3e-15 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.004G051500 [exp] 44 / 5e-06 AT5G28010 69 / 4e-15 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.011G025966 [exp] 44 / 9e-06 AT1G24020 55 / 7e-10 MLP-like protein 423 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence Show only first row Show all	>Lus10020497 pacid=23139575 polypeptide=Lus10020497 locus=Lus10020497.g ID=Lus10020497.BGIv1.0 annot-version=v1.0 ATGAGCACTCTTCTTCTGAAAGGCAAGGCGGAGGCACAGTTTGCCATCAGACTTGCTGCAAAAGAATTCCACAGCATCTTCAGTGCCAGACCTCACCATG TCTCCAACATGGCCCCTAACAAGATCAAGAACTGCGCTATGCATCAAGGCGAATGGGGCAAAAAGGGCACCATCCTTGTCTGGGATTACGTCCATGACGG GGTTGCGAAGGTGGCCAAGGAAGTAATCGAGGAGATAGACGAGGCGAATCTGTCGACGACATTCAAGGTGATTGAAGGGGATATAACAAAGGATTACAAG GAGTTTAAGATAACTGTGAAGGCGACTCCTCAATCCGCGGAGACAAGTCTGATCCAGTGGACGCTGGAGTATGAGAAGCTCCGTGAGGACTTTCCTGACA CCGATGCCATCTCCCTTCTGAACTTTGTCGTCCACATGAGCAAAGACATTGATGATCACCACACCAACCGAAACAACTAG
AA sequence Show only first row Show all	>Lus10020497 pacid=23139575 polypeptide=Lus10020497 locus=Lus10020497.g ID=Lus10020497.BGIv1.0 annot-version=v1.0 MSTLLLKGKAEAQFAIRLAAKEFHSIFSARPHHVSNMAPNKIKNCAMHQGEWGKKGTILVWDYVHDGVAKVAKEVIEEIDEANLSTTFKVIEGDITKDYK EFKITVKATPQSAETSLIQWTLEYEKLREDFPDTDAISLLNFVVHMSKDIDDHHTNRNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70840		MLP31	MLP-like protein 31 (.1)		Lus10020497 [exp]	0	1
AT2G02850		ARPN	plantacyanin (.1)		Lus10022800 [exp]	2.0	0.9779
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039478 [exp]	3.2	0.9778
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10036603 [exp]	4.5	0.9677
AT1G16390		3-Oct, ATOCT3	organic cation/carnitine trans...		Lus10005825 [exp]	5.5	0.9532
AT1G14160			Uncharacterised protein family...		Lus10036770 [exp]	5.7	0.9649
AT3G44710			Plant protein of unknown funct...		Lus10020562 [exp]	5.9	0.9676
AT3G53980			Bifunctional inhibitor/lipid-t...		Lus10040249 [exp]	7.2	0.9448
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10012312 [exp]	7.2	0.9629
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10008840 [exp]	7.7	0.9675
AT1G14160			Uncharacterised protein family...		Lus10037160 [exp]	8.3	0.9684

Compare expression of checked genes

Lus10020497 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.