Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70830 150 / 1e-46 MLP28 MLP-like protein 28 (.1.2.3.4.5) AT1G70850 146 / 2e-44 MLP34 MLP-like protein 34 (.1.2.3) AT1G70840 142 / 8e-44 MLP31 MLP-like protein 31 (.1) AT1G70890 140 / 3e-43 MLP43 MLP-like protein 43 (.1) AT5G28010 136 / 2e-41 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G70880 131 / 2e-39 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT5G28000 108 / 3e-30 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G23130 107 / 6e-30 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G35260 90 / 3e-23 MLP165 MLP-like protein 165 (.1) AT1G35310 82 / 2e-20 MLP168 MLP-like protein 168 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012466 [exp] 297 / 4e-105 AT1G70830 161 / 3e-51 MLP-like protein 28 (.1.2.3.4.5) Lus10012742 [exp] 269 / 7e-94 AT1G70830 158 / 6e-50 MLP-like protein 28 (.1.2.3.4.5) Lus10020497 [exp] 188 / 9e-62 AT1G70840 148 / 4e-46 MLP-like protein 31 (.1) Lus10002644 [exp] 96 / 2e-26 AT1G70850 58 / 1e-11 MLP-like protein 34 (.1.2.3) Lus10042490 [exp] 95 / 4e-25 AT1G14930 107 / 3e-30 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10042489 [exp] 85 / 3e-21 AT1G14960 104 / 5e-29 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10008932 [exp] 81 / 7e-19 AT4G14060 127 / 1e-36 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10028887 [exp] 77 / 4e-18 AT2G01520 129 / 1e-38 \(Zusammen-CA\)-enhanced 1, MLP-like protein 328 (.1) Lus10033397 [exp] 77 / 4e-18 AT1G14950 121 / 1e-35 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G111000 [exp] 190 / 1e-62 AT1G70830 175 / 8e-57 MLP-like protein 28 (.1.2.3.4.5) Potri.017G051200 [exp] 121 / 6e-36 AT1G70840 116 / 3e-34 MLP-like protein 31 (.1) Potri.017G051100 [exp] 122 / 8e-36 AT1G70840 115 / 3e-33 MLP-like protein 31 (.1) Potri.008G131300 [exp] 91 / 1e-23 AT1G14930 100 / 1e-27 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.008G131100 [exp] 82 / 4e-20 AT1G70890 107 / 3e-30 MLP-like protein 43 (.1) Potri.008G131200 [exp] 81 / 6e-20 AT1G14930 122 / 4e-36 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.010G096000 [exp] 66 / 4e-14 AT1G24020 188 / 3e-62 MLP-like protein 423 (.1.2) Potri.013G131000 [exp] 48 / 2e-07 AT1G24020 62 / 1e-12 MLP-like protein 423 (.1.2) Potri.004G020000 [exp] 43 / 2e-05 AT1G70880 69 / 3e-15 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.004G020100 [exp] 40 / 0.0002 AT1G70880 58 / 5e-11 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence Show only first row Show all	>Lus10020498 pacid=23139555 polypeptide=Lus10020498 locus=Lus10020498.g ID=Lus10020498.BGIv1.0 annot-version=v1.0 ATGAGTTGCTGTAGTCTGATACATGGGAAGCTGGAGGCATATGTGGGAGTTAGAGTAGCTGCTGATATTTTCCATGACATCTTCAGTGGAAGACCTCACC ATATCTCCAACATGGCTCCCCAGAAGATCAAGGCCTGTGATGTCCATGAAGGCGAATGGGGCAAACCAGGCACTGTCATCTGCTGGGATTACTTCCATGA CGGGGAAGCAAAGATGGCGAAAGAGGTGATCGAGGAGATCGACGATGTGAATCTGTCGACGACCTTCAAGGTGATAGAAGGAGATCTGATGAAGGACTAC AAGAACTTTAAGCTGGTGGTTAAGGCCACTCCCCAAAAGAAGACCGAGGGAGAAGACTGGTGTCTGGTTCACTGGATCCTGGACTACGAGAAGCTGAAAG AGGAAACCCCAGAGCCTTTCTCTCTGCTTGAATTTGTGGTTCACACCAGTAAAGACATTGATGACCATCACACCAAGAAGAAATGA
AA sequence Show only first row Show all	>Lus10020498 pacid=23139555 polypeptide=Lus10020498 locus=Lus10020498.g ID=Lus10020498.BGIv1.0 annot-version=v1.0 MSCCSLIHGKLEAYVGVRVAADIFHDIFSGRPHHISNMAPQKIKACDVHEGEWGKPGTVICWDYFHDGEAKMAKEVIEEIDDVNLSTTFKVIEGDLMKDY KNFKLVVKATPQKKTEGEDWCLVHWILDYEKLKEETPEPFSLLEFVVHTSKDIDDHHTKKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10020498 [exp]	0	1
AT4G35150			O-methyltransferase family pro...		Lus10033656 [exp]	1.0	0.9846
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10036168 [exp]	2.0	0.9659
AT3G26170		CYP71B19	"cytochrome P450, family 71, s...		Lus10018261 [exp]	3.2	0.9705
AT2G39415			F-box family protein (.1)		Lus10042304 [exp]	4.0	0.9520
AT5G19730			Pectin lyase-like superfamily ...		Lus10028364 [exp]	4.5	0.9651
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10006668 [exp]	4.6	0.9674
AT5G65980			Auxin efflux carrier family pr...		Lus10012708 [exp]	4.7	0.9575
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10018262 [exp]	5.3	0.9634
AT4G10380		AtNIP5;1, NIP5;...	NOD26-LIKE MIP 8, NOD26-LIKE M...		Lus10010153 [exp]	6.2	0.9545
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10034847 [exp]	6.5	0.9647

Compare expression of checked genes

Lus10020498 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.