Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09970 719 / 0 RLK7, LRRXI-23 ,LRR XI-23 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G19700 715 / 0 IKU2 HAIKU2, Leucine-rich repeat protein kinase family protein (.1) AT1G28440 494 / 5e-157 HSL1 HAESA-like 1 (.1) AT5G49660 489 / 8e-156 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G28490 460 / 3e-144 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT1G72180 449 / 2e-140 Leucine-rich receptor-like protein kinase family protein (.1) AT5G65710 442 / 1e-137 HSL2 HAESA-like 2 (.1) AT5G65700 431 / 2e-133 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G62870 400 / 4e-131 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) AT3G49670 424 / 9e-131 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007232 [exp] 738 / 0 AT1G09970 1186 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10028232 [exp] 733 / 0 AT1G09970 1181 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10012462 [exp] 680 / 0 AT1G09970 391 / 2e-128 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10007233 [exp] 495 / 7e-158 AT5G49660 1224 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10028234 [exp] 490 / 5e-156 AT5G49660 1234 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10013968 [exp] 488 / 1e-154 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10015393 [exp] 484 / 2e-153 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10039872 [exp] 476 / 1e-152 AT1G28440 942 / 0.0 HAESA-like 1 (.1) Lus10012463 [exp] 455 / 2e-152 AT3G62870 457 / 2e-165 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G081800 [exp] 919 / 0 AT1G09970 1033 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.002G106800 [exp] 781 / 0 AT1G09970 1204 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.011G058100 [exp] 504 / 4e-161 AT1G28440 1309 / 0.0 HAESA-like 1 (.1) Potri.004G049100 [exp] 501 / 1e-159 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.002G111700 [exp] 501 / 1e-159 AT5G49660 1229 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.019G078400 [exp] 485 / 8e-154 AT1G72180 1060 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G135400 [exp] 475 / 1e-149 AT1G28440 1109 / 0.0 HAESA-like 1 (.1) Potri.017G016600 [exp] 464 / 1e-145 AT1G28440 1130 / 0.0 HAESA-like 1 (.1) Potri.004G113800 [exp] 424 / 1e-140 AT3G62870 399 / 5e-142 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Potri.017G100800 [exp] 424 / 2e-140 AT3G62870 377 / 1e-133 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1 CL0101 [flax] [poplar] PELOTA PF01248 [flax] [poplar] Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Representative CDS sequence Show only first row Show all	>Lus10020500 pacid=23139571 polypeptide=Lus10020500 locus=Lus10020500.g ID=Lus10020500.BGIv1.0 annot-version=v1.0 ATGCTGGAAGGCGAGCTCCATGAGTTGAAGCCATTGACTAAGCTCGCATCTCTTCAGCTTTTTGAGAACCAGTTTTCCGGCGAGATCCCTGAGGAGATTG GCGAACTCAAGGGTCTTACTGAGATTTCACTTTATAGAAACAAGCTGGTGGGTTCGATTCCGCAGAAGATAGGATCGTGGGCTGATTTCTATTACATTGA CGTGTCGGAGAATTTCTTAACGGGTCAGATCCCACCTGACATGTGCAAAATGGGGCAAATGACTGATCTTTTGTTGTTGCAGAACAAACTCACGGGCGAA ATTCCAGCCAGCTATGCTGATTGCAAGTCTCTGGTGAGACTAAGGGTAAATAACAACTCACTTACTGGAAGTATTCCCCCTGGAATTTGGGGTTTGCCTA ACATATCAGTGATTGATCTCAGTATGAATCAGTTTGAAGGTTCCGTTACTGATGCTATTGGTCGTGCCAAGTCATTAGGATTGTTCAATTTGGCTAACAA TCGGTTTTCCGGGAACTTGCCTGCTGCGATTTCGGAAGCTTCTTTGTTGGTTTCTGTTTTGTTCAGCTTCAATCGGTTCACAGGTTCGATACCAGAAAGA ATTGGTGAATTGAAGAAACTGAGCAGTTTCTATTTAGACGGTAACACATTCTCTGGCACCATACCTTCCTCATTGGGTGCTTGTGTCTCTCTATCTGACA TCAACTTTTTTGGGAATATATTATCCGGTGAGATTCCTGAAGCTCTTGGAAGCTTGAAGAATCTGAACTCGTTAAACTTGTCGAGCAACAAGCTTTCTGG TGAGATTCCGATTTGCTTGTCGTCAATAAGGCTTAGCAATCTCGACTTGTCCAACAACCAACTGATGGGTCGCATACCATCGTCTCTTTCCCTAGAGGCA TTCCGACAAGGCTTCACCGGGAATCCAGGCTTATGCAGTGAAACTCTGGATGATTTCCATCGTTGTTCATCGAGATCTGCCAAATCTGGTCATCTCCGAG TTTTTTTATGGTGCTTTACAGCTATAATGCTGGTTTTGGTCTTTTCCATTTGCCTTTTCTTCTTGTCCATGAATTTGAGATCCCAAGAGAAGAGTCCTCT TGGCTGCGTACTGAAGCACAATTCTTCCTGGAACATGAAATCCTTTAGGGTGTTGAGTTTCCGGGAAAGCGACATCATCACCGCGATCAAATCAGAGAAC TTGATCGGGAAAGGAGGATCAGGAAATGTGTATAAGGCTACGATTGGAAATGGCAGTAAGGAGTTGGCTGTAAAGCATATCTGGATGACTAATAACAATC AAGGAGGGAGTTGCCGGAGCAGTTCAGCCATACTGGCAAAGGATAAGAAGAAACTTTGGTCGCCGGAGTTCGAAGCAGAGGTGGCGACCCTGAGTACGGT GAGGCATGTGAATGTTGTGAAGTTGTACTGCAGTATCACAAGTGAGGACAGCAACCTTTTAGTTTATGAGTACCTCCCGAATGGAAGCTTGTGGGATAAG CTACATTCCAGTAGTGAGAAAGTTGTTATGGATTGGGAGCTAAGGTATGCAATTGCTCTCGGTTCGGCAAGAGGGCTGGAGTACTTGCATCATTGCTTCG ATCGACCGGTCATCCATCGTGATGTCAAGTCCAGCAACATCTTACTAGACGAGGAATGGAACCCAAGGATTGCCGATTTTGGACTAGCCAAGATTCTCCA CGGGTCGTCTACCGTGGACAATTGGTCTCATGGTATTGCTGGAACTCATGGCTACATGGCTCCGGAGTATGGATACACGACGAAAATAAACGAGAAGAGC GACGTGTACAGCTTTGGAGTAGTTCTGATGGAGCTGGTGACAGGGAAAAGACCGATTCACGAGCCTGAATTCGGAGAGAAGAAGGATATAGTTGAATGGG TTTACAACAAACTGATGAGCAAGGAGAGCACAATAGCGAGTATTGTGGACTCGAACATCTCGGATTCACTAAAGGAAGATGCTGTACAAGTGCTGAAGAT TGCAGTTCGTTGCACAGCGAACGTACCGACATTGAGACCTTCGATGAGGATGGTAGTTCACATGCTGGAAGAAGCTCAGCCTTCTCTTGCCCTTGATCTA TCCAGGGTAGTTGTGGTTGGTAAAGAAGGTGAAAAGGTAGCAGGAAATTTTGGGTCCCCTGCCGCCCTCCTCTTCCCCACCTCCTTCAATCCTCTGCAGC TGTGCGTCAACGTAGACATGGCCCCAAAAAGAGGTGTTAAAGCCCCAGCCTTGACGAAGAAGAAACCTGAGAAAATTTCTAATCCATTGTTTGAGAAAAG GCCAAAGCAATTTGGAATCGGCGGTGCGCTGCCGCCAAAAAGGGACTTGACCAGATTTGTCAAGTGGCCTCATGTTGTTCGTATTCAGAGGCAAAGGAGG ATATTGAAGCAGCGTTTGAAGGTTCCTCCTGCAGTTAACCAATTCACAAAAGCACTTGACAAGAATCTCGCCACCCAAATGTTCAAGCTTTTGTTGAAAT ATCGTCCTGAGGACAAAGCTGCTAAGAAGGAAAGGCTTATTAGCAAAGCAAAAGCTGAGGCTGAGGGAAAGACCGTAGAGTCAAAGAAGCCCATCGTTGT TAAGTATGGTCTTAACCATGTGACATACCTTATTGAGCAGAACAAGGCTCAGCTGGTGATTATCGCTCATGATGTTGATCCTATTGAGCTAGTTGTATGG TTGCCTGCATTGTGCCGCAAGATGGAAGTCCCATATGCTATTGTGAAGGGCAAGTCCAGGCTTGGAGCGATAGTCCACAAGAAGACAGCTGCTGCGTTGT GCCTTACATCGGTGAAAAACGAGGACAAGATGGAGTTCAGCAAGATCTTGGAGGCAGTTAAGGCCAACTTCAACGACAAGTTTGATGAGCACAGGAAGAG GTGGGGTGGTGGGATCATGGGTTCCAAATCTCAGGCCAAGACCAAAGCCAAGGAGAGACTCTTGGCCAAGGAAGCTGCTCAAAGAATCTTGGTTTGTAAT GGTACATTTTCTTTACATCACTTCCACATTGATGGATCAATGGATGCTAATGTGATGACTGCTTGTGACTGGCTCTATATCTATCCAGAAGGGCTGCTCG AAATCTTGGTCCACGTCAAGAACGAGTACGATATTCCAATATTCCTGACCGAAAACGGGGTGGCTGATTTAAGTAACAACTCACTGCCTATAAATGATGA TCTGGATGACAAGTTGAGGATCAAATTCCACTTCCTTCAATCTGTGAAGGATGGAGATAATGTGAATGGGTACACCTTCTGGTCACTTCTCGAAAATTTC GAATGGGAACTTGGCTGCGTTGTCCGGTTCGGTATCACGTTCATAGACTTCGGGAATGATCTGAAAAGATACCCGAAACGTTCTGCCCTTTGGTTTAGAG ATTTTCTCCAGAAGCAGCAGAATGTAACTACGTTGTTGAACCCAGACATGTAA
AA sequence Show only first row Show all	>Lus10020500 pacid=23139571 polypeptide=Lus10020500 locus=Lus10020500.g ID=Lus10020500.BGIv1.0 annot-version=v1.0 MLEGELHELKPLTKLASLQLFENQFSGEIPEEIGELKGLTEISLYRNKLVGSIPQKIGSWADFYYIDVSENFLTGQIPPDMCKMGQMTDLLLLQNKLTGE IPASYADCKSLVRLRVNNNSLTGSIPPGIWGLPNISVIDLSMNQFEGSVTDAIGRAKSLGLFNLANNRFSGNLPAAISEASLLVSVLFSFNRFTGSIPER IGELKKLSSFYLDGNTFSGTIPSSLGACVSLSDINFFGNILSGEIPEALGSLKNLNSLNLSSNKLSGEIPICLSSIRLSNLDLSNNQLMGRIPSSLSLEA FRQGFTGNPGLCSETLDDFHRCSSRSAKSGHLRVFLWCFTAIMLVLVFSICLFFLSMNLRSQEKSPLGCVLKHNSSWNMKSFRVLSFRESDIITAIKSEN LIGKGGSGNVYKATIGNGSKELAVKHIWMTNNNQGGSCRSSSAILAKDKKKLWSPEFEAEVATLSTVRHVNVVKLYCSITSEDSNLLVYEYLPNGSLWDK LHSSSEKVVMDWELRYAIALGSARGLEYLHHCFDRPVIHRDVKSSNILLDEEWNPRIADFGLAKILHGSSTVDNWSHGIAGTHGYMAPEYGYTTKINEKS DVYSFGVVLMELVTGKRPIHEPEFGEKKDIVEWVYNKLMSKESTIASIVDSNISDSLKEDAVQVLKIAVRCTANVPTLRPSMRMVVHMLEEAQPSLALDL SRVVVVGKEGEKVAGNFGSPAALLFPTSFNPLQLCVNVDMAPKRGVKAPALTKKKPEKISNPLFEKRPKQFGIGGALPPKRDLTRFVKWPHVVRIQRQRR ILKQRLKVPPAVNQFTKALDKNLATQMFKLLLKYRPEDKAAKKERLISKAKAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVIIAHDVDPIELVVW LPALCRKMEVPYAIVKGKSRLGAIVHKKTAAALCLTSVKNEDKMEFSKILEAVKANFNDKFDEHRKRWGGGIMGSKSQAKTKAKERLLAKEAAQRILVCN GTFSLHHFHIDGSMDANVMTACDWLYIYPEGLLEILVHVKNEYDIPIFLTENGVADLSNNSLPINDDLDDKLRIKFHFLQSVKDGDNVNGYTFWSLLENF EWELGCVVRFGITFIDFGNDLKRYPKRSALWFRDFLQKQQNVTTLLNPDM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09970		RLK7, LRRXI-23 ...	receptor-like kinase 7, Leucin...		Lus10020500 [exp]	0	1
AT3G05590		RPL18	ribosomal protein L18 (.1)		Lus10031485 [exp]	5.7	0.8925
AT5G41190			unknown protein		Lus10008488 [exp]	6.3	0.8227
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10029824 [exp]	6.6	0.8914
AT5G27850			Ribosomal protein L18e/L15 sup...		Lus10029879 [exp]	7.7	0.8627
AT5G58420			Ribosomal protein S4 (RPS4A) f...		Lus10004272 [exp]	13.1	0.8750
AT1G18080		RACK1A_AT, ATAR...	RECEPTOR FOR ACTIVATED C KINAS...		Lus10017569 [exp]	13.4	0.8669
AT1G18080		RACK1A_AT, ATAR...	RECEPTOR FOR ACTIVATED C KINAS...		Lus10017570 [exp]	15.0	0.8487
AT3G16080			Zinc-binding ribosomal protein...		Lus10035878 [exp]	16.3	0.8525
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10020794 [exp]	16.4	0.8602
AT3G53740			Ribosomal protein L36e family ...		Lus10025342 [exp]	19.8	0.8522

Compare expression of checked genes

Lus10020500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.